Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13020 313 / 5e-100 EIF4B2 eukaryotic initiation factor 4B2 (.1) AT3G26400 295 / 2e-93 EIF4B1 eukaryotic translation initiation factor 4B1 (.1) AT4G38710 60 / 3e-09 glycine-rich protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036874 [exp] 350 / 2e-114 AT3G26400 355 / 4e-117 eukaryotic translation initiation factor 4B1 (.1) Lus10006469 [exp] 330 / 1e-109 AT3G26400 205 / 1e-61 eukaryotic translation initiation factor 4B1 (.1) Lus10006224 [exp] 187 / 3e-51 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012166 [exp] 58 / 8e-09 AT4G38710 159 / 2e-44 glycine-rich protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185400 [exp] 332 / 2e-107 AT3G26400 325 / 5e-105 eukaryotic translation initiation factor 4B1 (.1) Potri.010G048200 [exp] 321 / 1e-103 AT3G26400 349 / 1e-114 eukaryotic translation initiation factor 4B1 (.1) Potri.004G169100 [exp] 52 / 9e-07 AT4G38710 149 / 1e-40 glycine-rich protein (.1.2) Potri.014G123100 [exp] 49 / 3e-06 AT3G26400 55 / 3e-08 eukaryotic translation initiation factor 4B1 (.1) Potri.009G130200 [exp] 49 / 5e-06 AT4G38710 192 / 1e-56 glycine-rich protein (.1.2) Potri.002G198700 [exp] 49 / 5e-06 AT3G26400 50 / 1e-06 eukaryotic translation initiation factor 4B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06273 [flax] [poplar] eIF-4B Plant specific eukaryotic initiation factor 4B
Representative CDS sequence Show only first row Show all	>Lus10011412 pacid=23159238 polypeptide=Lus10011412 locus=Lus10011412.g ID=Lus10011412.BGIv1.0 annot-version=v1.0 ATGTCAAAGCCATGGGGGAACATCGGAACGTGGGCGGCGGAGGCAGAGCGGGAGGAGGAGGAAATGGAAGCGATCGCCGCTGCTGCTCCACCGCCGGACA CCAAGACCTACCCTAGCCTGAGGGAAGCTGTAACCGCGAAGCCGAAGAAGAAGAAGATGACGTTGCACGAGTTCTACTCCTCCGCAGCTGCCGGAGGCAG CGGCGGAGCCCGCAAGGGACTCACTCCGGAGGAGATGCTCCGTCTACCTACTGGGCCAAGAGAGCGGGACCCGGAGGAAATGCAGTATGGCCGACTCGGC GGCGGGTTTTCTGGCTATGGAGGTGGTGGTGGGAGGACGCGGGAGGACTCCAGCGATGGGCAGTGGGGTGGTGGTGGTGGCGGCGGCGGGAGGAGGGGTT ACGGTGGAGGAGGTGGTTTTGATGACGATCGTCGTGGTCAAGGTAATTCTAGGGTTTCGGATTTTGATTCTATGCCTTCCAGAGCTGATGAGGCGGATAA TTGGGCGACTGGGAAGAAGGCGTTTGTTCCGTCGATGGATTCTGGTCGACAGAGTCGGTACGGCTCGACTGGAATCGGCGGCGGCGGTGGTGGAATGGGA GGTGGCGGTGGTTCTAGAGCTGATGAAGTGGATAACTGGGCAGCTGGGAAGAAACCAGTGACGGTGAATCCAGGTAGATCGTCTACATTTGGTTCTGGAT TTCGAAACTCCGGTCCTGAGCCTGATCGGTGGACTAGAGGAGGTGGAGGTGATCGTGAGGTGGAGACTGAACGGCGGAGATTGGTTTTGAATCCTCCAAG AGCTGCTGATGGTGTTGTATCTGAGCAAATCCAGGTGACTAACAAACCGAGTCCGTTTGGTGCTGCTAGGCCGAGGGAAGAGATATTGGCTGAGAAAGGA TTGGACTGGAGGAAGCTGGAAACTGAGTTTGAAACAAAGAAGAGTCCTTCTTCGAGCAGACCGTCTAGTGCACATTCGATTCGGTCTGATGCAGTGGAGA ATGTGGCGACTCCGGTTAGGCCGAAGGTGAATCCTTTTGGGGATGCTAAGCCTAGGGAAGTGTTGTTACAGGAGAGAGGGCAAGATTGGCGCAAGATAGA CCGTGAATTGGACCGTCCTCAAAGACCTGAAACCGAGGAGGAAAAGTTGTTGAGAGAAGAAATCAACCAACTAAAGGAGCAATTCCAGAAGGAGCTTTCA ATGCAAGAGAGCAAGGAATCCGCCGATGGTGATCAGTCCGGTTTAAAAGATGTAATAAGCCAGAAGGAGAAGGAACTAGAAACACTGACCCGTGATTTTG ATGACAAAGTCCGATTTAGCCCCAAGCCATTTGAAAGACCCGGTTCTGGAGCTGGAAGGAGTGGCGGCTTCTCTGATGGTCATAGACCGTCTTCTCGATC TGGATCGATTGATGAATCGAGAAATGCAGAGTTTGTGGACAGGCCTCGCTCGCGTGGTGGTGCACAAGATATTTGGACACGGCCTGGTGATGAACGGAGA TCTTCTTACCAAGGCAGCAGAGAAAGAGGTTTTTCGGGTAGCAGAGACTCTGACAGGATCGAATCCATCGTTTGTGTATCGTCACTGGTAGTTGAGATCC AGTGTGCTTCTGCAGAACTTGTTCAAAGCTCTGCTGTTAAGACTTGA
AA sequence Show only first row Show all	>Lus10011412 pacid=23159238 polypeptide=Lus10011412 locus=Lus10011412.g ID=Lus10011412.BGIv1.0 annot-version=v1.0 MSKPWGNIGTWAAEAEREEEEMEAIAAAAPPPDTKTYPSLREAVTAKPKKKKMTLHEFYSSAAAGGSGGARKGLTPEEMLRLPTGPRERDPEEMQYGRLG GGFSGYGGGGGRTREDSSDGQWGGGGGGGGRRGYGGGGGFDDDRRGQGNSRVSDFDSMPSRADEADNWATGKKAFVPSMDSGRQSRYGSTGIGGGGGGMG GGGGSRADEVDNWAAGKKPVTVNPGRSSTFGSGFRNSGPEPDRWTRGGGGDREVETERRRLVLNPPRAADGVVSEQIQVTNKPSPFGAARPREEILAEKG LDWRKLETEFETKKSPSSSRPSSAHSIRSDAVENVATPVRPKVNPFGDAKPREVLLQERGQDWRKIDRELDRPQRPETEEEKLLREEINQLKEQFQKELS MQESKESADGDQSGLKDVISQKEKELETLTRDFDDKVRFSPKPFERPGSGAGRSGGFSDGHRPSSRSGSIDESRNAEFVDRPRSRGGAQDIWTRPGDERR SSYQGSRERGFSGSRDSDRIESIVCVSSLVVEIQCASAELVQSSAVKT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	0	1
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10006469 [exp]	1.0	0.9645
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	1.4	0.9380
AT4G28230			unknown protein		Lus10031619 [exp]	3.3	0.9219
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	4.0	0.9324
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	4.5	0.9319
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	5.5	0.9360
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007396 [exp]	8.1	0.9298
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10005445 [exp]	9.5	0.8840
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	10.4	0.9273
AT1G51160			SNARE-like superfamily protein...		Lus10027541 [exp]	10.8	0.9115

Compare expression of checked genes

Lus10011412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.