Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67850 573 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G08040 547 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 535 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT3G27470 528 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G13000 526 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G26440 515 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G24570 483 / 4e-171 Protein of unknown function (DUF707) (.1) AT4G12840 280 / 3e-91 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G18530 261 / 1e-83 Protein of unknown function (DUF707) (.1) AT1G11170 261 / 4e-83 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006472 [exp] 714 / 0 AT1G67850 598 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10016095 [exp] 536 / 0 AT2G28310 604 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10041316 [exp] 534 / 0 AT2G28310 590 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10032090 [exp] 533 / 0 AT3G27470 564 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10021463 [exp] 529 / 0 AT2G28310 594 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10003659 [exp] 516 / 0 AT3G27470 563 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10037396 [exp] 532 / 7e-178 AT5G60700 1181 / 0.0 glycosyltransferase family protein 2 (.1) Lus10022287 [exp] 496 / 2e-175 AT3G27470 548 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10035229 [exp] 462 / 2e-163 AT1G67850 452 / 1e-159 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185600 [exp] 620 / 0 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.010G047200 [exp] 602 / 0 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.017G065200 [exp] 566 / 0 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.009G011000 [exp] 528 / 0 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Potri.019G053000 [exp] 285 / 3e-93 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.014G175800 [exp] 270 / 3e-87 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.011G045300 [exp] 266 / 1e-85 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G036800 [exp] 262 / 3e-84 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G227700 [exp] 258 / 1e-82 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.003G003100 [exp] 256 / 6e-82 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10011414 pacid=23159214 polypeptide=Lus10011414 locus=Lus10011414.g ID=Lus10011414.BGIv1.0 annot-version=v1.0 ATGGGAATCTTCAGCCGGAGTGCGTTAAATAAGAAGCCGAATGACAGCTCGAGGCTGATTATAATGACATTCTTCGGGATAGTATTCGGATTCTCGATCG GAGTATCTTTCCCTTCATTATCTGTTTCAAAGCTGAATTTTGCATCTGGCCTTCTTCCAACCATTGATTTGTCATATATGGGGGATAAAAAGCTGGGATT GTCTAGTCCACCGAGCTTGAATAGCTCAACCAATAGTACTAGTGTCGGTAACTCTGCCAAATTGAACGATACATCAAAGATATGGGTCCCCTCGAATCCT CGAGGCGCAGAAAGGTTGCCACCGGGAATCATTGAAGCCGAATCCGACTTCAATTTGCGCCGTTTGTGGGGGAAACCCAGCGAGGACTTGACCAAGAAAC CAAAGTATCTCGTTACGTTTACTGTTGGTTATAATCAGAGACGCAATATTGATGCATGTGTCAAGAAGTTCTCAGGGAACTTTACGATCCTGTTGTTTCA CTATGACGGTAGAGTGTCGGAATGGGACGAGTTCGAGTGGTCCAAGCAGGCTATTCATGTCAGCGCTCGGAAGCAGACGAAATGGTGGTATGCAAAGCGG TTTTTGCATCCGGATATCGTAGCATCGTACGATTACATTTTTATCTGGGACGAAGATCTAGGCGTAGAGCATTTCAATGCAGAAGAATACTTAAAGCTAG TTAAGAAACACGGGTTGGAGATTTCGCAGCCCGGTCTGGATCCTAGTAAAGGCTTAACCTGGCAGATGACCAAGAGAAGAGGAGATCAAGAAGTTCACAA AACGACGACCGAGAAACCTGGTTGGTGCTCGGACCCTCATGTACCACCCTGTGCAGCTTTTGTTGAGATCATGGCTCCGGTGTTCTCTCGAGATGCATGG CGCTGCGTTTGGTACATGATTCAGAATGACTTGGTACATGGATGGGGTCTTGACTTTGCTCTTAGAAGATGCGTCGAGCCTGCCCATGAGAAGATTGGAG TAGTAGATTCTCAATGGATTGTTCATCAAGGTGTCCCTTCACTAGGAAACCAGGGCGAAACGAAGAATGGAAGGCCACCATGGCAAGGGGTGAGGGAGAG ATGCAGGAAGGAATGGACAATGTTTCAGAACCGAGTAGCGATCGCGGAGAACGATTACTTCAAGAAACTGGGAATCGGTCATTCGAATTCGAGTGCGCAT TGA
AA sequence Show only first row Show all	>Lus10011414 pacid=23159214 polypeptide=Lus10011414 locus=Lus10011414.g ID=Lus10011414.BGIv1.0 annot-version=v1.0 MGIFSRSALNKKPNDSSRLIIMTFFGIVFGFSIGVSFPSLSVSKLNFASGLLPTIDLSYMGDKKLGLSSPPSLNSSTNSTSVGNSAKLNDTSKIWVPSNP RGAERLPPGIIEAESDFNLRRLWGKPSEDLTKKPKYLVTFTVGYNQRRNIDACVKKFSGNFTILLFHYDGRVSEWDEFEWSKQAIHVSARKQTKWWYAKR FLHPDIVASYDYIFIWDEDLGVEHFNAEEYLKLVKKHGLEISQPGLDPSKGLTWQMTKRRGDQEVHKTTTEKPGWCSDPHVPPCAAFVEIMAPVFSRDAW RCVWYMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIVHQGVPSLGNQGETKNGRPPWQGVRERCRKEWTMFQNRVAIAENDYFKKLGIGHSNSSAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67850			Protein of unknown function (D...		Lus10011414 [exp]	0	1
AT5G39785			Protein of unknown function (D...		Lus10015368 [exp]	3.5	0.8238
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10022148 [exp]	6.2	0.8226
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010037 [exp]	9.2	0.7783
AT5G17680			disease resistance protein (TI...		Lus10019708 [exp]	9.2	0.8102
AT1G77810			Galactosyltransferase family p...		Lus10006933 [exp]	12.2	0.7983
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10021152 [exp]	12.5	0.7979
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10035313 [exp]	15.5	0.7800
AT5G56460			Protein kinase superfamily pro...		Lus10010319 [exp]	17.3	0.7874
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Lus10038746 [exp]	17.8	0.7133
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10033840 [exp]	19.7	0.8002

Compare expression of checked genes

Lus10011414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.