Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64295 52 / 2e-07 F-box associated ubiquitination effector family protein (.1) AT5G41720 49 / 6e-07 unknown protein AT1G64290 44 / 6e-05 F-box protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006473 [exp] 0 / 1 AT5G41720 48 / 4e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038000 [exp] 93 / 2e-21 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.010G224400 [exp] 90 / 4e-20 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.014G187100 [exp] 84 / 3e-18 AT1G64295 132 / 2e-35 F-box associated ubiquitination effector family protein (.1) Potri.007G037500 [exp] 83 / 6e-18 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1) Potri.017G066400 [exp] 80 / 5e-17 AT1G64295 125 / 9e-33 F-box associated ubiquitination effector family protein (.1) Potri.008G214000 [exp] 80 / 9e-17 AT1G64295 140 / 3e-38 F-box associated ubiquitination effector family protein (.1) Potri.006G167500 [exp] 70 / 1e-13 AT1G64290 118 / 2e-30 F-box protein-related (.1) Potri.001G462650 [exp] 66 / 3e-12 AT1G64295 121 / 3e-31 F-box associated ubiquitination effector family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011415 pacid=23159246 polypeptide=Lus10011415 locus=Lus10011415.g ID=Lus10011415.BGIv1.0 annot-version=v1.0 ATGAGATTAGGATTCCAACGAAAACATCTTACTTCATGCCCAAGCAACCCCTCACACCCTCCTTTTTATATAATAAATTCGCCGCCGTCTGCATTCCTAT ATCCCAACAAATCACAACAATGGCGACGCCGGAGCAAAACCAAAGTCAAAACCTTTCCTCCTCCGCCGTTGAATTGCTCCGAAGTACTCACGCGTTGCTC CTCAGCCACAGTCGCCAAATTCCGAGCCACCTCCCGGGGTTTCAACTCCCACACATACGACTCCAACTTCAGGCGACTCCACCTCCGCACGTCCGCCGTT TCCGGCTTCCTCTGCCAGCGCCTCCACTCCACCCGCTTCTCCGCAACACTCGTTCCTAATTCTTCTTCTTCTTGTTCGAGCAATATCGAACTCGGTTTCC TGACTCACCCGACTCGCATTCTGGCCGCCTCGGGCAACCAAGGATTAATTGTCTACAAGACGGAGGAGCGGTTCGGCCACCCTTGCCGCAACGTGACCAA ACCGTTGACCAACCAGCGGGTCCCATTCCCGAACCCCAAGACGAGGTACTTCACTAGATCGGTCAGAATTCTAATCTTGGGGTCCAGGGAGGAAGGATCT AGAATTATATTCGAAAAGGACTCCGGCTCGAGTTTGGAAACCGAATCGCAAGGTAGGCCCCACACCCTTCCATGTCAATGGAGGTCCATCCGGTTCAAGG TCGTCCGGCTGTCCGACCCGAAGCCTTCAACCCGGATAGGTTCGTGTTGGCAGGTGAGGTGTGAGGTCTTTGACTCCGACGTATGGCGATGGAAGCTTCT AGAAGGAAACGCTGAGATGTTGGGGCCCGGGGAGTTCTCGAGGTCGAGTCAGCAAATAAGGGGTCGTTTTTAG
AA sequence Show only first row Show all	>Lus10011415 pacid=23159246 polypeptide=Lus10011415 locus=Lus10011415.g ID=Lus10011415.BGIv1.0 annot-version=v1.0 MRLGFQRKHLTSCPSNPSHPPFYIINSPPSAFLYPNKSQQWRRRSKTKVKTFPPPPLNCSEVLTRCSSATVAKFRATSRGFNSHTYDSNFRRLHLRTSAV SGFLCQRLHSTRFSATLVPNSSSSCSSNIELGFLTHPTRILAASGNQGLIVYKTEERFGHPCRNVTKPLTNQRVPFPNPKTRYFTRSVRILILGSREEGS RIIFEKDSGSSLETESQGRPHTLPCQWRSIRFKVVRLSDPKPSTRIGSCWQVRCEVFDSDVWRWKLLEGNAEMLGPGEFSRSSQQIRGRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41720			unknown protein		Lus10011415 [exp]	0	1
					Lus10002802 [exp]	5.3	0.6341
					Lus10042684 [exp]	8.2	0.6501
AT1G03350			BSD domain-containing protein ...		Lus10034015 [exp]	13.4	0.6004
					Lus10013743 [exp]	31.8	0.5705
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10030809 [exp]	44.6	0.5924
					Lus10019266 [exp]	53.8	0.5667
					Lus10043138 [exp]	56.5	0.5640
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10019514 [exp]	73.7	0.5529
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10002889 [exp]	99.7	0.5135
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10005108 [exp]	114.8	0.5298

Compare expression of checked genes

Lus10011415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.