Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67856 105 / 4e-30 RING/U-box superfamily protein (.1) AT1G24580 75 / 2e-18 RING/U-box superfamily protein (.1) AT2G04240 71 / 3e-16 XERICO RING/U-box superfamily protein (.1.2) AT1G15100 49 / 6e-08 RHA2A RING-H2 finger A2A (.1) AT3G61460 48 / 1e-07 BRH1 brassinosteroid-responsive RING-H2 (.1) AT1G67855 45 / 1e-07 unknown protein AT3G30460 47 / 2e-07 RING/U-box superfamily protein (.1) AT2G01150 47 / 2e-07 RHA2B RING-H2 finger protein 2B (.1) AT3G43430 46 / 6e-07 RING/U-box superfamily protein (.1) AT1G63840 46 / 1e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034407 [exp] 50 / 2e-08 AT2G04240 61 / 2e-12 RING/U-box superfamily protein (.1.2) Lus10019150 [exp] 50 / 3e-08 AT2G04240 62 / 6e-13 RING/U-box superfamily protein (.1.2) Lus10036378 [exp] 50 / 6e-08 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10028773 [exp] 49 / 1e-07 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10007937 [exp] 48 / 2e-07 AT1G15100 100 / 2e-27 RING-H2 finger A2A (.1) Lus10007936 [exp] 47 / 2e-07 AT2G01150 104 / 3e-29 RING-H2 finger protein 2B (.1) Lus10013475 [exp] 47 / 3e-07 AT2G01150 104 / 2e-29 RING-H2 finger protein 2B (.1) Lus10024657 [exp] 47 / 4e-07 AT3G61460 200 / 4e-66 brassinosteroid-responsive RING-H2 (.1) Lus10017510 [exp] 47 / 4e-07 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G047100 [exp] 133 / 4e-41 AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1) Potri.008G185800 [exp] 115 / 1e-33 AT1G67856 127 / 2e-38 RING/U-box superfamily protein (.1) Potri.014G170400 [exp] 81 / 4e-20 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2) Potri.010G133300 [exp] 51 / 8e-09 AT3G61460 69 / 2e-15 brassinosteroid-responsive RING-H2 (.1) Potri.010G133200 [exp] 51 / 8e-09 AT3G61460 69 / 3e-15 brassinosteroid-responsive RING-H2 (.1) Potri.007G086300 [exp] 51 / 1e-08 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.009G170460 [exp] 50 / 2e-08 AT4G38140 85 / 9e-22 RING/U-box superfamily protein (.1) Potri.014G087700 [exp] 49 / 4e-08 AT3G61460 220 / 2e-74 brassinosteroid-responsive RING-H2 (.1) Potri.002G161900 [exp] 48 / 2e-07 AT3G61460 234 / 7e-80 brassinosteroid-responsive RING-H2 (.1) Potri.010G133700 [exp] 47 / 2e-07 AT3G61460 66 / 4e-14 brassinosteroid-responsive RING-H2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10011416 pacid=23159205 polypeptide=Lus10011416 locus=Lus10011416.g ID=Lus10011416.BGIv1.0 annot-version=v1.0 ATGGGGCTCTCGAGCTTCCCAACACCTTCAGGAGGAATTCTACCTCTGCTAGTAGTCAACACAGTAATCTCAGTCGCCTTGCTCAAGAACATGCTCAGAT CTCTGCTTCAGCTTGTTTTCATGGCTTCTTCTCCAATCATCGATCATCATGGTCATCAAGATCGTGACTTGGAACAAAAGAGTAGGAGAATATCGATTAC CCAGTTCAGATTGCTGAGCTGTGAAGGTTCTTCGAAGGGCGACAATGGCGGAAATGGAACAGAGTGTTGTTGCTGTGTGTGTTTGTGTGGGTTTGAGGAT GAAGAGGAAGTGAGTGAGTTGTCTTGTAAGCATTTCTTCCACAAAGGTTGTCTTCAGAAGTGGTTCGATAACCGTCACGTTACTTGCCCTCTATGTAGAT CCATATGA
AA sequence Show only first row Show all	>Lus10011416 pacid=23159205 polypeptide=Lus10011416 locus=Lus10011416.g ID=Lus10011416.BGIv1.0 annot-version=v1.0 MGLSSFPTPSGGILPLLVVNTVISVALLKNMLRSLLQLVFMASSPIIDHHGHQDRDLEQKSRRISITQFRLLSCEGSSKGDNGGNGTECCCCVCLCGFED EEEVSELSCKHFFHKGCLQKWFDNRHVTCPLCRSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67856			RING/U-box superfamily protein...		Lus10011416 [exp]	0	1
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10040225 [exp]	2.2	0.8438
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	2.8	0.8219
AT3G58800			unknown protein		Lus10007354 [exp]	9.3	0.8093
AT3G14460			LRR and NB-ARC domains-contain...		Lus10006793 [exp]	10.2	0.7986
AT5G38250			Protein kinase family protein ...		Lus10038814 [exp]	10.2	0.7850
AT3G06170			Serinc-domain containing serin...		Lus10034023 [exp]	11.2	0.8071
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10010569 [exp]	13.9	0.7549
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10040307 [exp]	17.0	0.8052
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10023833 [exp]	17.7	0.7854
AT5G60460			Preprotein translocase Sec, Se...		Lus10036119 [exp]	19.2	0.7517

Compare expression of checked genes

Lus10011416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.