Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43870 191 / 1e-58 Pectin lyase-like superfamily protein (.1) AT3G59850 184 / 7e-56 Pectin lyase-like superfamily protein (.1) AT1G65570 162 / 2e-47 Pectin lyase-like superfamily protein (.1) AT2G43860 155 / 8e-45 Pectin lyase-like superfamily protein (.1) AT2G43890 145 / 5e-41 Pectin lyase-like superfamily protein (.1) AT2G43880 145 / 5e-41 Pectin lyase-like superfamily protein (.1) AT1G05660 140 / 4e-39 Pectin lyase-like superfamily protein (.1) AT1G05650 139 / 2e-38 Pectin lyase-like superfamily protein (.1) AT1G70500 122 / 8e-32 Pectin lyase-like superfamily protein (.1) AT3G07850 117 / 5e-30 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002126 [exp] 330 / 1e-112 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 240 / 2e-77 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 235 / 9e-76 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 214 / 2e-67 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 203 / 3e-63 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 200 / 8e-62 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 194 / 6e-60 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 141 / 2e-39 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 138 / 4e-38 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144100 [exp] 219 / 2e-69 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 213 / 2e-66 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 211 / 2e-66 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G005800 [exp] 209 / 2e-65 AT3G59850 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 207 / 7e-65 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 206 / 1e-64 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.017G005300 [exp] 205 / 4e-64 AT3G59850 504 / 3e-179 Pectin lyase-like superfamily protein (.1) Potri.017G003500 [exp] 205 / 5e-64 AT3G59850 498 / 4e-177 Pectin lyase-like superfamily protein (.1) Potri.017G005600 [exp] 205 / 5e-64 AT3G59850 496 / 5e-176 Pectin lyase-like superfamily protein (.1) Potri.017G004500 [exp] 204 / 1e-63 AT3G59850 520 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10011417 pacid=23182579 polypeptide=Lus10011417 locus=Lus10011417.g ID=Lus10011417.BGIv1.0 annot-version=v1.0 ATGGGCACTGGCCTGCGGTTACACGTGCCAAAAGGAAGGTTCCTTATTGAGAGGAGCATGGAGTTGAAGGGACCATGTAGCAATAACGCCATATTCGTTC GCATTGACGGCACCCTCGTCGCCGCCTCTGACATCTGGGCTATTAACAACGACCCTAACTGGATTGGCTTCAGCAAGGTTGACGGCGTCACAATCTCCGG AGGCTTCCTTGACGGCAAGGGCGCCCCTTTGTGGTCCTGCAAGATGAACGACACTCAGAATTGTCCGACCGGCGCTACGAACTCGAAGAATGTGATAGTG AGTCGGGTGACATCAGTCAACACACATATGTTCCACCTAGTCATAAATCACTGCGAAAATGTGAGGGTGCAAGGTGTAACGCTCATAGCTCTTGGAAACT CTCTCAACACCGATGGAATCCATGTCCAGTTATCCACCGGAGTCACCATCGTCAACTCCAAAATCTCAACCGGCGACGATTGCATCTCCATTGGTGCAGG CGCCGCCAACTTGTGGATCGAGAATGTAGCATCGGGCGTCCAAGTCAACGACGTGACCTACGAGGACATACAAGGAACATCGGCTACGGAAGTTGCGGTG AAGTTTGACTGCAGCAGCGAGAAACCTTGCAGAGGGATCAGATTGGAGAATGTTAAGCTTACTTACGACAAAGAACCAGCTGCTGTTGCGTTGTCGTATT GCGCACACGCGCTTGGAACCGCGATTGGCATTGTCCAACCAACCAGCTGCTTGATATTTGCAAGCACCCCCTCAAAGGGAAATTTATATTGA
AA sequence Show only first row Show all	>Lus10011417 pacid=23182579 polypeptide=Lus10011417 locus=Lus10011417.g ID=Lus10011417.BGIv1.0 annot-version=v1.0 MGTGLRLHVPKGRFLIERSMELKGPCSNNAIFVRIDGTLVAASDIWAINNDPNWIGFSKVDGVTISGGFLDGKGAPLWSCKMNDTQNCPTGATNSKNVIV SRVTSVNTHMFHLVINHCENVRVQGVTLIALGNSLNTDGIHVQLSTGVTIVNSKISTGDDCISIGAGAANLWIENVASGVQVNDVTYEDIQGTSATEVAV KFDCSSEKPCRGIRLENVKLTYDKEPAAVALSYCAHALGTAIGIVQPTSCLIFASTPSKGNLY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	0	1
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	1.0	1.0000
					Lus10002332 [exp]	2.0	1.0000
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	3.0	1.0000
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	3.5	1.0000
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10014056 [exp]	3.9	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10031075 [exp]	4.2	1.0000
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10033189 [exp]	4.6	1.0000
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10033628 [exp]	4.9	1.0000
					Lus10030331 [exp]	4.9	0.9864
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010873 [exp]	5.1	0.9701

Compare expression of checked genes

Lus10011417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.