Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43870 463 / 3e-163 Pectin lyase-like superfamily protein (.1) AT3G59850 454 / 1e-159 Pectin lyase-like superfamily protein (.1) AT2G43890 393 / 1e-135 Pectin lyase-like superfamily protein (.1) AT2G43860 391 / 1e-134 Pectin lyase-like superfamily protein (.1) AT1G05660 374 / 5e-128 Pectin lyase-like superfamily protein (.1) AT1G05650 366 / 6e-125 Pectin lyase-like superfamily protein (.1) AT2G43880 365 / 2e-124 Pectin lyase-like superfamily protein (.1) AT1G65570 358 / 7e-122 Pectin lyase-like superfamily protein (.1) AT3G57510 263 / 4e-84 ADPG1 Pectin lyase-like superfamily protein (.1) AT2G41850 260 / 3e-83 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002124 [exp] 668 / 0 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10002126 [exp] 511 / 0 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 494 / 4e-175 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 462 / 6e-163 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 460 / 9e-162 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 456 / 3e-160 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 359 / 1e-121 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 349 / 8e-118 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 345 / 2e-116 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144100 [exp] 500 / 7e-178 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 497 / 1e-176 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 496 / 4e-176 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 496 / 5e-176 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 496 / 6e-176 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 491 / 2e-173 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.017G005800 [exp] 490 / 2e-173 AT3G59850 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Potri.017G005300 [exp] 476 / 2e-168 AT3G59850 504 / 3e-179 Pectin lyase-like superfamily protein (.1) Potri.017G003500 [exp] 473 / 4e-167 AT3G59850 498 / 4e-177 Pectin lyase-like superfamily protein (.1) Potri.017G004500 [exp] 468 / 4e-165 AT3G59850 520 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10011418 pacid=23182625 polypeptide=Lus10011418 locus=Lus10011418.g ID=Lus10011418.BGIv1.0 annot-version=v1.0 ATGAACAAGTCAGTCCTTTCGCTTCTCTCCCTCCTCCTCCCCATTGCTCTGCTCTCCCTATCCCCACTATCATCAGCTGCTACTCTGCAGCTCAACGTCG TCCAATTCGGAGCAAAACCAGACGGCAAGACCGATTCGACCAAAGCCTTCGTAGCCGCATGGAAACAGGCCTGCGGTTCTACCAAACCAGTCAGATTGTA CGTCCCCAAAGGAAGGTTCTTAACCAAGAGCATGGAGTTGAAAGGGCCTTGCAAGAACAATGACATCTTCATCCGAATCGACGGCACCCTCCTCGCCCCT TCCAACATCTGGGCCATCGGAAATAACCCCAATTGGATCGGTTTCCAGTACGTCGACGGTGTCACCATCTCCGGCGGCGTCCTAGACGGCCAGGGGGCCG GCTTGTGGGCCTGCAAAACCGGCGGCAGAAAATGCCCAACTGGCGTTACGAGTCTGGGATTTTCATTCAGCAAAAATGTATTGGTGAGCGGGTTGACTTC TTTGAACAGCCAGATGTTTCACATAGTGATAAACTTCTGCAACAATGTGAAATTGAAAGGAGTTAAGGTGTCTGCACCTGAAAATTCGCCCAACACTGAT GGAATCCATGTCCAGATGTCGATAGGAGTAAGCATCGTCGGCACCAAAATCGGCACCGGAGACGATTGTGTCTCCGTCGGCCCCGGCGCCGCCAATCTTT GGATCGAGAATGTATCATGTGGGCCAGGCCATGGCATCAGCATTGGGAGTCTAGGGAAGGATGTGAAGGAGGCGGGAGTTCAGAACGTGACGGTTAAATC GACGACATTCACCGGAACGACAAACGGGGTGAGAATCAAGGCATGGGGGAAGCAGAGCAACGGATTTGCAAGGAACATTCTTTTCCAACATTCAACGATG AACAATGTACAGAATCCCATCATAATCGACCAGCGTTACTGTCCGGAACATAACTGTGCCGACTCGGCATCGGGGATTAAGGTGAGCGACGTGACGTACC AAGATATACACGGGACGTCAGCGACCCAAGTGGCGCTGAAATTCGATTGCAGCAAGAGGAATCCTTGCAAAGGGATCAGGCTGGACAATGTGAGATTGAT GTACAAAACTCAGCCGGCGGTAGCATCTTGTGCTAATGCTGCTGGAACTACTTATGGACTCGTTCAGCCTAACAGCTGCTTATAA
AA sequence Show only first row Show all	>Lus10011418 pacid=23182625 polypeptide=Lus10011418 locus=Lus10011418.g ID=Lus10011418.BGIv1.0 annot-version=v1.0 MNKSVLSLLSLLLPIALLSLSPLSSAATLQLNVVQFGAKPDGKTDSTKAFVAAWKQACGSTKPVRLYVPKGRFLTKSMELKGPCKNNDIFIRIDGTLLAP SNIWAIGNNPNWIGFQYVDGVTISGGVLDGQGAGLWACKTGGRKCPTGVTSLGFSFSKNVLVSGLTSLNSQMFHIVINFCNNVKLKGVKVSAPENSPNTD GIHVQMSIGVSIVGTKIGTGDDCVSVGPGAANLWIENVSCGPGHGISIGSLGKDVKEAGVQNVTVKSTTFTGTTNGVRIKAWGKQSNGFARNILFQHSTM NNVQNPIIIDQRYCPEHNCADSASGIKVSDVTYQDIHGTSATQVALKFDCSKRNPCKGIRLDNVRLMYKTQPAVASCANAAGTTYGLVQPNSCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43870			Pectin lyase-like superfamily ...		Lus10011418 [exp]	0	1
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Lus10022610 [exp]	10.1	0.8801
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10027864 [exp]	15.7	0.8865
AT5G61350			Protein kinase superfamily pro...		Lus10000562 [exp]	16.9	0.8830
AT3G51710			D-mannose binding lectin prote...		Lus10025258 [exp]	21.8	0.8762
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10041241 [exp]	28.3	0.8695
AT3G52790			peptidoglycan-binding LysM dom...		Lus10031662 [exp]	32.3	0.8706
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10002321 [exp]	32.6	0.8738
AT1G23390			Kelch repeat-containing F-box ...		Lus10029128 [exp]	36.7	0.8514
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10009872 [exp]	39.9	0.8587
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10038689 [exp]	45.5	0.7865

Compare expression of checked genes

Lus10011418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.