Plant FIBer expression Database

Lus10011420 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19650 86 / 5e-19 cyclin-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002122
[exp]
436 / 7e-154 AT3G19650 94 / 2e-21 cyclin-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G088600
[exp]
184 / 4e-56 AT3G19650 124 / 3e-33 cyclin-related (.1)
Potri.001G295000
[exp]
101 / 2e-26 AT3G19650 65 / 4e-13 cyclin-related (.1)
PFAM info
Representative CDS sequence
>Lus10011420 pacid=23182591 polypeptide=Lus10011420 locus=Lus10011420.g ID=Lus10011420.BGIv1.0 annot-version=v1.0
ATGTCTCGTCGTGATCGTGATAGCGGCGGAAGGGATCGTTACGATCGCGATGGTGGCTCAAGGCACCGCCGCTCAGGCTTTGACAGAGAACCCAGTCCCA
AAAGATCTAGAAAGGATGAGAAGCCAGAGTCCGAACAGTTACTAAGTAGACCTGGTTCCCAAAGACAGCCCATCAACCTGCAAGATGCAGTGCCAGTTGG
TGTTGAACCGGGAAGAACGGAATCTAAGTCGAAGTCTCCTGATAGGAAGAAAGAATCTGAAAAGAAATCCAGTGAGGATCATGCTAGGGACGCACCAAGT
TCTGAACCAGCTGTAGTGCCTCGATCTCGATCTGATTTCCAGCATGATGACAATCGTAAGGCTGGGCAAGTTGGTCGAGGCTTTGTCCGAAGGGCTACCA
ATGACCGTGGATGGAGAGATTCGAAGGACGACAGACGTGAAAGGGCAGCAACCAGGTCGGTAGCTACCGATTCACACGAGAGAGACCGAAAATCAAACAC
CAAGGGTGACGACAACAGTGTCTGGCGCCCACCTGTGAGGAGAAGACCTTCATTCAGGGAGCAAAAGATTCCAGTCGACTCTGAAAATGGCGACAAACCA
GCCATAGACTCCAATCGTTCTAGCCAGATAGATCGTCCCGTGTCAGGTGGAGAAAGGAGGGACGGAAGAGACCGTTATCCTCGCAATGTAGACAGATTGG
ATAGGAACAGGGGTGCATTTCTCGGCAGGGACAGGGGAGGATATGGAGGTGTTGCAAGAAGCAATTACGTGGGAAGAGAAAGCTTCAATGGAGGAAGGCA
AAGCTATCATCCTCAGAGTGGAAGGCGAGAAGAGAAATGGAAGCATGATCTGTTTGATGACGCCACTAAAAGCCCCACCACAAAGAATGACGATGATCAA
ATTGCCAGAGTAGAAGCACTATTGGCTTCATAG
AA sequence
>Lus10011420 pacid=23182591 polypeptide=Lus10011420 locus=Lus10011420.g ID=Lus10011420.BGIv1.0 annot-version=v1.0
MSRRDRDSGGRDRYDRDGGSRHRRSGFDREPSPKRSRKDEKPESEQLLSRPGSQRQPINLQDAVPVGVEPGRTESKSKSPDRKKESEKKSSEDHARDAPS
SEPAVVPRSRSDFQHDDNRKAGQVGRGFVRRATNDRGWRDSKDDRRERAATRSVATDSHERDRKSNTKGDDNSVWRPPVRRRPSFREQKIPVDSENGDKP
AIDSNRSSQIDRPVSGGERRDGRDRYPRNVDRLDRNRGAFLGRDRGGYGGVARSNYVGRESFNGGRQSYHPQSGRREEKWKHDLFDDATKSPTTKNDDDQ
IARVEALLAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G19650 cyclin-related (.1) Lus10011420
[exp]
0 1
AT2G45630 D-isomer specific 2-hydroxyaci... Lus10041392
[exp]
1.0 0.8468
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Lus10033990
[exp]
8.1 0.7905
AT1G75010 ARC3 ACCUMULATION AND REPLICATION O... Lus10000187
[exp]
9.2 0.8136
AT1G20830 MCD1 multiple chloroplast division ... Lus10013209
[exp]
9.7 0.7921
Lus10026259
[exp]
10.8 0.7573
AT4G21060 Galactosyltransferase family p... Lus10036154
[exp]
15.2 0.7887
AT1G08750 Peptidase C13 family (.1.2.3) Lus10005520
[exp]
16.9 0.7776
AT1G14410 WHY1, ATWHY1, P... A. THALIANA WHIRLY 1, ssDNA-bi... Lus10037206
[exp]
17.7 0.8142
AT2G21860 violaxanthin de-epoxidase-rela... Lus10002789
[exp]
21.9 0.7924
AT5G15390 tRNA/rRNA methyltransferase (S... Lus10032993
[exp]
25.0 0.7881

Lus10011420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.