Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33890 239 / 5e-76 unknown protein AT2G14850 213 / 3e-66 unknown protein AT4G31440 88 / 7e-19 unknown protein AT2G24530 87 / 2e-18 unknown protein AT5G67410 80 / 1e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011423 [exp] 284 / 2e-93 AT4G33890 294 / 3e-98 unknown protein Lus10002119 [exp] 276 / 2e-90 AT4G33890 297 / 2e-99 unknown protein Lus10002120 [exp] 199 / 2e-63 AT2G14850 112 / 2e-31 unknown protein Lus10026942 [exp] 146 / 9e-40 AT2G24530 351 / 7e-119 unknown protein Lus10020146 [exp] 143 / 1e-38 AT2G24530 346 / 4e-117 unknown protein Lus10042444 [exp] 138 / 9e-37 AT2G24530 386 / 9e-133 unknown protein Lus10026225 [exp] 127 / 9e-33 AT2G24530 347 / 1e-117 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G090500 [exp] 290 / 2e-95 AT4G33890 305 / 4e-102 unknown protein Potri.001G296300 [exp] 273 / 4e-89 AT4G33890 325 / 2e-110 unknown protein Potri.009G090400 [exp] 240 / 3e-76 AT4G33890 318 / 2e-107 unknown protein Potri.001G296200 [exp] 235 / 3e-74 AT4G33890 295 / 3e-98 unknown protein Potri.003G187400 [exp] 124 / 3e-32 AT2G24530 229 / 7e-72 unknown protein Potri.001G037500 [exp] 116 / 3e-29 AT2G24530 236 / 2e-74 unknown protein Potri.018G005700 [exp] 101 / 2e-23 AT2G24530 443 / 8e-155 unknown protein Potri.006G274800 [exp] 95 / 4e-21 AT2G24530 415 / 1e-143 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011422 pacid=23182609 polypeptide=Lus10011422 locus=Lus10011422.g ID=Lus10011422.BGIv1.0 annot-version=v1.0 ATGTCATCCAACCAAAGGTACACGAGGGTTGATACTTTAGAGATCAAAGCGCTAATTATGAAAAGGATTGGGCATCTTAGAGCTGACAAGTACTTTGACC AGCTGACAAGGCTGTTCAGTTTAAAGACGACCAAGACCGAGTTCAATAAGCTTTGTGTTAGGATCATCGGTAGAGAAAATGTTCCTCTTCACAACCAGCT CATCAGGTCCATTCTCAAGAATGCTTGCCTAGGAAAGGTTCCTCCACCTTTGAAAGTTGCAAAAATTCCACCTACTACTAGCCTTAATGTCTCCAATGGC TGCCCGAGATCTAGTCCTCCTTCTCCTCGCAAGGGCAGCAGTCGGAACTTCAAGTACTCTAAAGACCGGCGCAGTCCACTGGGGCCACTTAGCAAGCCCT ATAATCTATCAAGTGATGCGGAATTGACCTCACTTGGCAGTAGACCTCCTGTTGAAGTTGCTTCTGTGGAAGAAGGGGAAGAGGTTGAACAGGTAGCCGG GAGTAGTCATGGTGTTCAGAGTAGAAGTCCAGTTACTGCTCCTCTTGGTATTTCCGAGGCGTCTCGTAAATCGCTCTCGAATATGTCTATATCTAGCAAG TTTAATGCAGTACGCGAGACCTGTCAGAATAGTGGTGAGCTGCCTGATACGAGATTATTGAGGAGCCGGTTGCAGCAGAAGTTGCAGGATGAAGGTTTGC TAGTATCAGTTGACTGTGTTGACTTGCTGAATAAGTCCTTGGATGTGTACTTGAAAAGGCTGGTTGAGCCTTGTATGGGCTTAGCTACCTCAAGGTCGAG AAATGGCCGCTTGCAGGAATCGGTTTGTGGGTCAATGCTTGACTTTCGTGTATCTGTGGAGTCGAATCCCCATATGCTGGGAGTAGAGTGGGCTGAGCAA CTGGAGAGAATTATCTTGCGCACATCTGAGGAAAAGGTGTGCTTTGAGCTAGCAGTCCTGAGAAAGAGATGGAACTCAGCCTCATTGTTGGATAAAAATG GGAGGTTGACTTTCAATGGGTGGCAGATGTTGAAGTGTCAGGGGATTGCGTTGAGGTCCAGTCAAGTTTCAGAGCCTGTTAGCAAGCTGAACGGTTCGAG TTTGAAATCTTATGCCATTGACCTTGGGAATCACCAGGACGCACGAATTGCAGCAGGCTGGTTTGTAGATCCTGTTAAATGGGTGACTGTTTGTTGCTCC TGTTAA
AA sequence Show only first row Show all	>Lus10011422 pacid=23182609 polypeptide=Lus10011422 locus=Lus10011422.g ID=Lus10011422.BGIv1.0 annot-version=v1.0 MSSNQRYTRVDTLEIKALIMKRIGHLRADKYFDQLTRLFSLKTTKTEFNKLCVRIIGRENVPLHNQLIRSILKNACLGKVPPPLKVAKIPPTTSLNVSNG CPRSSPPSPRKGSSRNFKYSKDRRSPLGPLSKPYNLSSDAELTSLGSRPPVEVASVEEGEEVEQVAGSSHGVQSRSPVTAPLGISEASRKSLSNMSISSK FNAVRETCQNSGELPDTRLLRSRLQQKLQDEGLLVSVDCVDLLNKSLDVYLKRLVEPCMGLATSRSRNGRLQESVCGSMLDFRVSVESNPHMLGVEWAEQ LERIILRTSEEKVCFELAVLRKRWNSASLLDKNGRLTFNGWQMLKCQGIALRSSQVSEPVSKLNGSSLKSYAIDLGNHQDARIAAGWFVDPVKWVTVCCS C

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14850			unknown protein		Lus10011422 [exp]	0	1
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	2.4	0.9010
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	10.2	0.8844
AT1G05410			Protein of unknown function (D...		Lus10004900 [exp]	12.6	0.8742
AT3G51500			unknown protein		Lus10014816 [exp]	13.7	0.8655
AT4G29490			Metallopeptidase M24 family pr...		Lus10008578 [exp]	21.2	0.8678
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	21.4	0.8768
AT5G61540			N-terminal nucleophile aminohy...		Lus10009560 [exp]	26.7	0.8680
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	31.0	0.8733
AT2G16860			GCIP-interacting family protei...		Lus10039220 [exp]	32.4	0.8610
AT3G06760			Drought-responsive family prot...		Lus10013420 [exp]	32.5	0.8432

Compare expression of checked genes

Lus10011422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.