Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33890 285 / 7e-95 unknown protein AT2G14850 252 / 1e-82 unknown protein AT5G67410 151 / 2e-43 unknown protein AT2G24530 152 / 1e-42 unknown protein AT4G31440 140 / 3e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002119 [exp] 590 / 0 AT4G33890 297 / 2e-99 unknown protein Lus10011422 [exp] 320 / 1e-107 AT2G14850 278 / 5e-92 unknown protein Lus10026942 [exp] 181 / 1e-53 AT2G24530 351 / 7e-119 unknown protein Lus10020146 [exp] 180 / 2e-53 AT2G24530 346 / 4e-117 unknown protein Lus10042444 [exp] 179 / 5e-53 AT2G24530 386 / 9e-133 unknown protein Lus10026225 [exp] 160 / 5e-46 AT2G24530 347 / 1e-117 unknown protein Lus10002120 [exp] 122 / 3e-34 AT2G14850 112 / 2e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G090500 [exp] 358 / 3e-123 AT4G33890 305 / 4e-102 unknown protein Potri.009G090400 [exp] 349 / 1e-119 AT4G33890 318 / 2e-107 unknown protein Potri.001G296300 [exp] 345 / 6e-118 AT4G33890 325 / 2e-110 unknown protein Potri.001G296200 [exp] 315 / 2e-106 AT4G33890 295 / 3e-98 unknown protein Potri.018G005700 [exp] 178 / 2e-52 AT2G24530 443 / 8e-155 unknown protein Potri.003G187400 [exp] 137 / 2e-37 AT2G24530 229 / 7e-72 unknown protein Potri.001G037500 [exp] 134 / 3e-36 AT2G24530 236 / 2e-74 unknown protein Potri.006G274800 [exp] 108 / 2e-26 AT2G24530 415 / 1e-143 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011423 pacid=23182602 polypeptide=Lus10011423 locus=Lus10011423.g ID=Lus10011423.BGIv1.0 annot-version=v1.0 ATGTCATCCAATCAACGCTACACGCGAGTTGATACGTTAGAGATCAAAGCTCTACTGATCAAAAGGATCGGCAATCACAGAGCTGACAAGTACTTCGATC AGCTAACAAGATTTCTCACCTTGAAGACCACCAAGTCCGAATTCGATAGGTTTTGCGTTCCAATCATCGGCAGAGTAAATGTTCGTCTTCACAACCAGCT CTTAAGATCCATTCTCAAGAATGCTTGTCTCGGGAAGGTTCCTCCTCCTTTCAAAACTGCAAAAAGATCACCACTCAGCAGCCTCAACGTTAAAGTCTCA GGTGATAATAGTAGTCTTCATTCGCTCTACGGGGAAGCTTTTCCTCCTTCGCCTCGCAAGTGCAGGTCCCCTCGAGATCGCAAGTTTAAGGATCGTCCTA GTCCTCTCGGGCCACTTGGTAAGCCCCATAGTATATTAAGTGATAGTGCTACTGAGTTGCTTTCACTTGGAAGTAGACCTCTTGCGTCTGTGGAAGAAGG GGAAGAGGTTGAACAGGTTGCAGGAAGTCCCGGTGTTCAGAGTCGTAGCCCGGTCACTGCTCCTTTTGGTATTTCCATGAATTTCGGACTGTCTCGTAAG GCTATCCCTTACATATCTGCAGTAAACAGTACTCAGTACCGGCAGACCTGCCACAGAATCGGCGAGCTACCTGATACGAGATTATTGAGAGACCGAATGC AGCAGAAGTTACAGGAGGAGGGGATGCGAGTCTCGGTGGATTGTGCAAATGTGTTGAATAATGCATTGGATACATATTTGAAAAGGTTGATTGAGCCTTG TATGAGTGTATCCGGCTCAAGGTCTCGGAGTTTGCACGACTCAAGTGCTTATCGACTCGTTCCTGGGTCGAATGAAGTGTCATCTGTTCGGTACAGGCAA CGAATATCAGAGCCTCGCTTCTGTTCGATGCTGGACTTTCGTGTATCAGTTGGATCGAATCCTCAGATTCTGGGACCGGATTGGGCAGTGCAGTTGGAGA AAGTTAACCTTGGTAGCTTCTGA
AA sequence Show only first row Show all	>Lus10011423 pacid=23182602 polypeptide=Lus10011423 locus=Lus10011423.g ID=Lus10011423.BGIv1.0 annot-version=v1.0 MSSNQRYTRVDTLEIKALLIKRIGNHRADKYFDQLTRFLTLKTTKSEFDRFCVPIIGRVNVRLHNQLLRSILKNACLGKVPPPFKTAKRSPLSSLNVKVS GDNSSLHSLYGEAFPPSPRKCRSPRDRKFKDRPSPLGPLGKPHSILSDSATELLSLGSRPLASVEEGEEVEQVAGSPGVQSRSPVTAPFGISMNFGLSRK AIPYISAVNSTQYRQTCHRIGELPDTRLLRDRMQQKLQEEGMRVSVDCANVLNNALDTYLKRLIEPCMSVSGSRSRSLHDSSAYRLVPGSNEVSSVRYRQ RISEPRFCSMLDFRVSVGSNPQILGPDWAVQLEKVNLGSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33890			unknown protein		Lus10011423 [exp]	0	1
AT3G56460			GroES-like zinc-binding alcoho...		Lus10003691 [exp]	5.7	0.8418
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10004568 [exp]	6.2	0.8314
AT1G55000			peptidoglycan-binding LysM dom...		Lus10029925 [exp]	41.7	0.7660
AT1G67340			HCP-like superfamily protein w...		Lus10015784 [exp]	49.4	0.8113
AT1G27000			Protein of unknown function (D...		Lus10036718 [exp]	69.7	0.8130
AT4G30790			unknown protein		Lus10007701 [exp]	78.2	0.7813
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	80.3	0.8081
AT5G59190			subtilase family protein (.1)		Lus10004682 [exp]	114.1	0.7771
					Lus10016819 [exp]	128.0	0.7514
AT1G67300			Major facilitator superfamily ...		Lus10034930 [exp]	129.7	0.7817

Compare expression of checked genes

Lus10011423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.