Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52150 1320 / 0 HD ATHB15, ICU4, CNA, ATHB-15 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) AT4G32880 1252 / 0 HD ATHB8, ATHB-8 homeobox gene 8 (.1) AT2G34710 1028 / 0 HD ATHB14, PHB-1D, ATHB-14, PHB PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G30490 1005 / 0 HD ATHB9, PHV PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT5G60690 990 / 0 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT4G21750 101 / 9e-22 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G79840 88 / 9e-18 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT3G61150 85 / 1e-16 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G04890 84 / 1e-16 HD PDF2 protodermal factor 2 (.1) AT4G00730 84 / 2e-16 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037568 [exp] 1585 / 0 AT1G52150 1441 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10011616 [exp] 1142 / 0 AT4G32880 1293 / 0.0 homeobox gene 8 (.1) Lus10021470 [exp] 1019 / 0 AT5G60690 1419 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10000719 [exp] 1017 / 0 AT5G60690 1409 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10023357 [exp] 1000 / 0 AT2G34710 1316 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10038449 [exp] 996 / 0 AT2G34710 1336 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10002037 [exp] 910 / 0 AT1G52150 1049 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10006765 [exp] 107 / 1e-23 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 105 / 5e-23 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188800 [exp] 1404 / 0 AT1G52150 1476 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.003G050100 [exp] 1384 / 0 AT1G52150 1488 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.018G045100 [exp] 1315 / 0 AT4G32880 1400 / 0.0 homeobox gene 8 (.1) Potri.006G237500 [exp] 1313 / 0 AT4G32880 1412 / 0.0 homeobox gene 8 (.1) Potri.001G372300 [exp] 1093 / 0 AT2G34710 1358 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.011G098300 [exp] 1081 / 0 AT2G34710 1350 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.009G014500 [exp] 1019 / 0 AT5G60690 1382 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.004G211300 [exp] 989 / 0 AT5G60690 1375 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.002G230200 [exp] 112 / 3e-25 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 103 / 2e-22 AT4G04890 1185 / 0.0 protodermal factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [flax] [poplar] PAS_Fold PF08670 [flax] [poplar] MEKHLA MEKHLA domain CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10011426 pacid=23182593 polypeptide=Lus10011426 locus=Lus10011426.g ID=Lus10011426.BGIv1.0 annot-version=v1.0 ATGTCTTATAAAGATGGGAATAAGAATGCTCAGATGGGAAACTTGGATAATGGGAAGTATGTCCGTTACACCCCTGAGCAGGTTGAAGCTCTTGAGAGGC TCTATCTCGAGTGTCCTAAGCCTAGCTCAATTCGCCGCCAGCAGTTCATTCGAGACTGCCCTATCCTCTCCAACATTGAACCTAAACAGATCAAAGTTTG GTTCCAGAACCGAAGATGTAGGGAGAAGCAAAGGAAAGAGTCGTCTCGGCTTCAAGGCGTGAATCGGAAGCTGACGGCAATGAATAAGCTTCTCATGGAG GAAAATGATAGGTTGCAGAAGCAAGTGTCACATCTGGTGTATGAGAACAGCTACTTTCGCCAGCATACCCAGAAAACGACTCTTTCAACCAAAGACGCAG TTTGTGATTCAGTGGTCACAACTGGTCAACATCACTTGACACCTCAGCATCCTCCAAGGGATGCTAGTCCTGCAGGGCTATTGTCCATTGCAGAAGAAAC TTTAACAGAGTTTATTTCTAAGGCTACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATT TCTCATGGTTGCATTGGTGTTGCAGCACGAGCCTGCGGCCTAGTGGGTCTAGAACCCACAAGGGTAGCAGAAATCCTCAAAGACCGACCTTCGTGGTTTC GCGATTGTCGGTCTGTGGATGTTGTGAACGTGTTGCCAACAACTAATGGTGGAACAATCGAGCTACTTTACATGCAGCTCTATGCTCCAACAACTCTGGC ACCTGCACGTGATTTCTGGTCGTTGCGTTACACTTCAGTACTGGAAGATGGTAGTCTTGTGATATGTGAGAGGTCACTTAAGAACACTCAAAATGGTCCT AGTATGCCGCCAGCGCAGCATTTCGTAAGAGCAGAAATGCTACCTAGTGGGTACCTGATACGACCTTGTGAAGGGGGCGGCTCAATCATTCACATAGTTG ACCATGTAGATTTGGAGCCATGGAGCGTGCCTGAAGTTCTACGTCCACTCTATGAGTCATCCACCGTGCTTGCTCAAAAGACAACTATGGCTGCTTTGCG TCATCTGAGGCAGATAGCGCAGGAGTTTTCTCAGACTAATGTAAGCAACTCTGGTAGACGACCAGCAGCGCTGCGGGCTTTGAGCCAGAGGTTGAGCAGG GGTTTCAATGAGGCTCTCAATGGATTCACTGATGAGGGATGGTCAATGCTGGGAAATGATGGAATGGATGATGTTACTATTCTTGTTAATACGTCGCCTG ATAAACTGATGGGTTTAAATCTTCCCTTCTCTAATGGGTTTCAATCTGTTACGAATTCAGTTTTATGTGCCAAAGCATCAATGCTTTTACAGAATGTTCC TCCTGCGATACTGCTCAGGTTCTTGCGCGAGCACAGATCAGAATGGGCAGATAACGGCATTGATGCCTACTCAGCCGCGGCAATCAGAGTTGGTCCCTGT AGCTTGCCTGGTGCTCATGTCGGCAGTTTTGGTGGACAGGTTATACTTCCTTTGGCCCAAACGATGGAGCATGAAGAGTTCTTGGAGGTTGTTAAACTGG AAAGCGTTGTGAATTCCCCTGAAGAAGCAATGATGCCACCTAGGGACATATTTCTCTTACAAGAAGCCACGAGTCCAAATCGCACGCTGGACCTTGCATC TGCTCTTGAAATCGGACCGGCTGGGAGCAAGGGAGCAAAGGATTCGTCTACTAGCTCTGGCTGTGTTAGATCAGTGATGACTATTGCATTTGAATTTGCA TTTGAGAGCCATATGCAAGAACATGTAGCTGCCATGGCTCGTCAGTATGTTCGGAGCATCATATCCTCGGTCCAGAGGGTGGCATTGGCTCTTTCCCCTT CCAACTTGGGTTCACTTGCTGGTCTTCGTTCATCGCTGGGCACACCTGAAGCACAGACTCTTGCTCGTTGGATCAACCAAAGTTATAGAGTTTACTTGGG TGTGGAGCTGCTTAAGTCCAACAGCGAAGGAGGAGGTGGTGAATCGATCCTTAAATCTCTGTGGCATCACTCTGATGCAATGTTATGCTGCTCTCTAAAG GCAATGCCGGTATTCACATTCGCTAATCAGGCGGGGCTCGACATGCTGGAGACGACTTTGGTTGCTCTACAGGACATAAGTCTAGAGAAGATCTTCGACG ACAATGGAAGGAAGACTCTATGCTCAGAATTCCCACAGATCATTCAACAGGGATATGCATGCCTTGCTGGCGGTATCTGCATGTCGAGCATGGGAAGGCC TGCTTCATACGAGAAGGCGGTGGCATGGAAAGTGTTGAACGAGGAAGAGAATGCACACTGCATCTGCTTCATGTTTGTGAACTGGTCTTTTGTTTAA
AA sequence Show only first row Show all	>Lus10011426 pacid=23182593 polypeptide=Lus10011426 locus=Lus10011426.g ID=Lus10011426.BGIv1.0 annot-version=v1.0 MSYKDGNKNAQMGNLDNGKYVRYTPEQVEALERLYLECPKPSSIRRQQFIRDCPILSNIEPKQIKVWFQNRRCREKQRKESSRLQGVNRKLTAMNKLLME ENDRLQKQVSHLVYENSYFRQHTQKTTLSTKDAVCDSVVTTGQHHLTPQHPPRDASPAGLLSIAEETLTEFISKATGTAVEWVQMPGMKPGPDSIGIVAI SHGCIGVAARACGLVGLEPTRVAEILKDRPSWFRDCRSVDVVNVLPTTNGGTIELLYMQLYAPTTLAPARDFWSLRYTSVLEDGSLVICERSLKNTQNGP SMPPAQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQIAQEFSQTNVSNSGRRPAALRALSQRLSR GFNEALNGFTDEGWSMLGNDGMDDVTILVNTSPDKLMGLNLPFSNGFQSVTNSVLCAKASMLLQNVPPAILLRFLREHRSEWADNGIDAYSAAAIRVGPC SLPGAHVGSFGGQVILPLAQTMEHEEFLEVVKLESVVNSPEEAMMPPRDIFLLQEATSPNRTLDLASALEIGPAGSKGAKDSSTSSGCVRSVMTIAFEFA FESHMQEHVAAMARQYVRSIISSVQRVALALSPSNLGSLAGLRSSLGTPEAQTLARWINQSYRVYLGVELLKSNSEGGGGESILKSLWHHSDAMLCCSLK AMPVFTFANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIIQQGYACLAGGICMSSMGRPASYEKAVAWKVLNEEENAHCICFMFVNWSFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	0	1
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10037568 [exp]	1.4	0.9718
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10021470 [exp]	2.8	0.9257
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	3.2	0.9478
AT1G35710			Protein kinase family protein ...		Lus10003612 [exp]	4.5	0.9253
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10000719 [exp]	5.5	0.8863
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10016722 [exp]	7.1	0.8848
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011616 [exp]	8.3	0.9334
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	8.8	0.8968
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	9.9	0.9004
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10024301 [exp]	10.6	0.8853

Compare expression of checked genes

Lus10011426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.