Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25840 167 / 3e-53 Protein of unknown function (DUF1677) (.1) AT1G79770 147 / 3e-45 Protein of unknown function (DUF1677) (.1) AT2G25780 91 / 3e-23 Protein of unknown function (DUF1677) (.1) AT5G20670 89 / 2e-22 Protein of unknown function (DUF1677) (.1) AT4G14819 87 / 3e-22 Protein of unknown function (DUF1677) (.1) AT3G22540 84 / 5e-21 Protein of unknown function (DUF1677) (.1) AT1G72510 85 / 8e-21 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) AT1G54095 82 / 8e-20 Protein of unknown function (DUF1677) (.1) AT2G09970 76 / 3e-17 Protein of unknown function (DUF1677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037569 [exp] 293 / 6e-103 AT5G25840 173 / 1e-55 Protein of unknown function (DUF1677) (.1) Lus10006044 [exp] 154 / 1e-47 AT5G25840 175 / 2e-56 Protein of unknown function (DUF1677) (.1) Lus10000571 [exp] 152 / 9e-47 AT5G25840 174 / 9e-56 Protein of unknown function (DUF1677) (.1) Lus10013156 [exp] 102 / 2e-27 AT1G72510 157 / 2e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10008118 [exp] 101 / 4e-27 AT1G72510 157 / 1e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10010564 [exp] 96 / 1e-25 AT3G22540 151 / 1e-48 Protein of unknown function (DUF1677) (.1) Lus10006107 [exp] 95 / 3e-25 AT3G22540 155 / 2e-50 Protein of unknown function (DUF1677) (.1) Lus10037683 [exp] 88 / 7e-22 AT1G72510 134 / 2e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10015670 [exp] 82 / 8e-20 AT1G72510 139 / 7e-43 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G050200 [exp] 221 / 3e-74 AT5G25840 152 / 3e-47 Protein of unknown function (DUF1677) (.1) Potri.001G188700 [exp] 218 / 5e-73 AT1G79770 157 / 2e-49 Protein of unknown function (DUF1677) (.1) Potri.018G045600 [exp] 172 / 8e-55 AT5G25840 157 / 3e-49 Protein of unknown function (DUF1677) (.1) Potri.001G166900 [exp] 105 / 7e-29 AT1G72510 190 / 2e-62 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.003G067800 [exp] 105 / 1e-28 AT1G72510 194 / 5e-64 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G237300 [exp] 99 / 2e-26 AT2G25780 122 / 6e-36 Protein of unknown function (DUF1677) (.1) Potri.010G086000 [exp] 93 / 1e-24 AT4G14819 136 / 3e-43 Protein of unknown function (DUF1677) (.1) Potri.008G154500 [exp] 89 / 5e-23 AT3G22540 133 / 1e-41 Protein of unknown function (DUF1677) (.1) Potri.006G219100 [exp] 83 / 2e-20 AT1G72510 131 / 7e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G140600 [exp] 77 / 3e-18 AT5G20670 147 / 5e-46 Protein of unknown function (DUF1677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07911 [flax] [poplar] DUF1677 Protein of unknown function (DUF1677)
Representative CDS sequence Show only first row Show all	>Lus10011427 pacid=23182585 polypeptide=Lus10011427 locus=Lus10011427.g ID=Lus10011427.BGIv1.0 annot-version=v1.0 ATGGCACCACATGGAGAGACCCTTGTAAACACAAACACCAACAACATGTACACAAAGTCCACAAGGATGACCAAAACCAACAACATCCAAAGGACGGTCT CGGACATCTCGTTCGAGCTGACCAAGATGGGAGCACTCGACCACCACCACCCCCACCACCAGGCACCAGCACTCCCTGTGATCTCTGAGGTCGAGGATGC CAAGTGCGAGTGTTGTGGGATGAGCGAGGAGTGCACCCCGGAGTACATTGATCGAATCCGGTCCAAGTTCCTTGGCAAGCTGGTCTGCGGGCTGTGCTCA GAGGCTGTGAAGGAGGAGATGGTCAAGGCCACCCCCAAGAAAGTAGGGTTGGAGGAGGCATTAGGGTTGCATATGAGTGCATGCTCGAGGTTCAACAAGT TTGGGAGGGCTTACCCGGTGTTGTCTCAAGCCGAGGCAATGAGGGAGATGCTGAAGAAGAGCACTAGGAGGGTTAAGTCATTTAACCCTAAGAGTGGTGC TCAGAAGATTGGTGGCCTTGCTAGGAGCTCAAGCTGTATCCCTGCCATCACAAGAGACTTGCATCATGTCTAG
AA sequence Show only first row Show all	>Lus10011427 pacid=23182585 polypeptide=Lus10011427 locus=Lus10011427.g ID=Lus10011427.BGIv1.0 annot-version=v1.0 MAPHGETLVNTNTNNMYTKSTRMTKTNNIQRTVSDISFELTKMGALDHHHPHHQAPALPVISEVEDAKCECCGMSEECTPEYIDRIRSKFLGKLVCGLCS EAVKEEMVKATPKKVGLEEALGLHMSACSRFNKFGRAYPVLSQAEAMREMLKKSTRRVKSFNPKSGAQKIGGLARSSSCIPAITRDLHHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25840			Protein of unknown function (D...		Lus10011427 [exp]	0	1
					Lus10016100 [exp]	1.0	0.9532
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10011597 [exp]	2.8	0.9212
AT3G47570			Leucine-rich repeat protein ki...		Lus10040186 [exp]	4.5	0.8908
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	4.6	0.9212
AT1G79600			Protein kinase superfamily pro...		Lus10035701 [exp]	4.7	0.8604
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042379 [exp]	6.0	0.8719
					Lus10023767 [exp]	8.7	0.8472
					Lus10000488 [exp]	8.8	0.8864
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016441 [exp]	12.0	0.8787
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10007023 [exp]	14.9	0.8539

Compare expression of checked genes

Lus10011427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.