Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30050 525 / 0 transducin family protein / WD-40 repeat family protein (.1) AT3G01340 512 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 70 / 1e-13 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 63 / 4e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26060 57 / 3e-09 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 57 / 5e-09 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G64350 55 / 2e-08 SEH1H Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 53 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 52 / 3e-07 TAF5 TBP-associated factor 5 (.1) AT4G32990 51 / 4e-07 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037571 [exp] 612 / 0 AT2G30050 523 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10001904 [exp] 78 / 4e-16 AT1G64350 442 / 3e-157 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003896 [exp] 76 / 1e-15 AT1G64350 434 / 4e-154 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021365 [exp] 66 / 5e-12 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017045 [exp] 61 / 3e-10 AT2G26060 486 / 5e-174 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10042333 [exp] 59 / 1e-09 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10011224 [exp] 58 / 4e-09 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 58 / 4e-09 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 57 / 4e-09 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G068900 [exp] 563 / 0 AT2G30050 526 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.010G100400 [exp] 562 / 0 AT2G30050 517 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G141300 [exp] 502 / 0 AT2G30050 465 / 2e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.001G221000 [exp] 74 / 1e-14 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G138300 [exp] 70 / 2e-13 AT1G64350 457 / 4e-163 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G212800 [exp] 69 / 4e-13 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 66 / 5e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 63 / 5e-11 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 57 / 9e-09 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G144800 [exp] 57 / 1e-08 AT3G44530 1398 / 0.0 homolog of histone chaperone HIRA (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10011429 pacid=23182580 polypeptide=Lus10011429 locus=Lus10011429.g ID=Lus10011429.BGIv1.0 annot-version=v1.0 ATGCCTTTACAGAAGATTGAAACGGGTCATGAGGACACAGTTCATGATGTCCAAATGGATTACTACGGCAAACGAATCGCAAGTGCTTCAGCGGACCACT CCATCAAGATTATCGGAGTGAGTAACAACACCTCTCAGCATCTAGCTAAGTTGACTGGCCACCAAGGCCCTGTTTGGCAAGTGTCTTGGGCACACCCTAA ATTCGGGTCCTTGCTGGCCTCCTGTTCTTACGATGGGCGTGTGATTCTGTGGAAAGAAGGTAATCCCAACGAGTGGATGCAAGCACATGTCTTCGATGAG CACAAGTCCTCGGTTAACTCTCTCGCTTGGGCTCCTCACGAACTGGGACTTTGTCTAGCCTGCGGGTCATCGGATGGCAACATATCGGTTTTCACTGCAC GAGCTGACGGTGGCTGGGACACATCAAAGATCGATCAAGCTCACCCGGTTGGAGTCACCTCAGTCTCTTGGGCTCCATCAACTGCCCCCGGTGCACTGGT CAGTTCGGGTTTACTCGACCCAGTCCAAAAGCTCTGCTCGGGTGGCTGTGACAACACCGTCAAAGTGTGGAAGCTGTACAATGGGACATGGAAGATGGAC TGCTTCCCTGCTCTCCAAATGCACACCGACTGGGTGAGGGATGTCGCTTGGGCACCGAACTTGGGCCTCCCGAAATCGACCATTGCTAGTGCTTCTCAGG ACGGGAAGGTGATCATATGGACCGTGGCTAAAGAAGGAGAGCAGTGGGAAGGTAAGATCTTGAATGATTTCAACACTCCCGTTTGGAGGGTCTCGTGGTC TCTCACCGGTAACATCCTGGCCGTGGCTGATGGGAACAATGCTGTGACTCTGTGGAGAGAAGCTGTGGATGGGGAGTGGCAGCAGGTCACTACAGTTGAT TAG
AA sequence Show only first row Show all	>Lus10011429 pacid=23182580 polypeptide=Lus10011429 locus=Lus10011429.g ID=Lus10011429.BGIv1.0 annot-version=v1.0 MPLQKIETGHEDTVHDVQMDYYGKRIASASADHSIKIIGVSNNTSQHLAKLTGHQGPVWQVSWAHPKFGSLLASCSYDGRVILWKEGNPNEWMQAHVFDE HKSSVNSLAWAPHELGLCLACGSSDGNISVFTARADGGWDTSKIDQAHPVGVTSVSWAPSTAPGALVSSGLLDPVQKLCSGGCDNTVKVWKLYNGTWKMD CFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIWTVAKEGEQWEGKILNDFNTPVWRVSWSLTGNILAVADGNNAVTLWREAVDGEWQQVTTVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	0	1
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	1.4	0.9704
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10027401 [exp]	1.4	0.9688
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10032113 [exp]	2.0	0.9643
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	2.2	0.9625
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	3.5	0.9664
AT4G08960			phosphotyrosyl phosphatase act...		Lus10011297 [exp]	5.8	0.9409
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	6.5	0.9604
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10031535 [exp]	6.5	0.9236
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10008470 [exp]	7.7	0.9357
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10011539 [exp]	8.4	0.9533

Compare expression of checked genes

Lus10011429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.