Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32890 219 / 8e-70 GATA GATA9 GATA transcription factor 9 (.1) AT5G25830 206 / 1e-64 GATA GATA12 GATA transcription factor 12 (.1) AT2G45050 171 / 8e-52 GATA GATA2 GATA transcription factor 2 (.1) AT3G60530 170 / 1e-51 GATA GATA4 GATA transcription factor 4 (.1) AT5G66320 144 / 1e-40 GATA GATA5 GATA transcription factor 5 (.1.2) AT3G51080 132 / 2e-36 GATA GATA6 GATA transcription factor 6 (.1) AT4G34680 131 / 3e-36 GATA GATA3 GATA transcription factor 3 (.1.2) AT1G08010 129 / 4e-35 GATA GATA11 GATA transcription factor 11 (.1.2) AT4G36240 127 / 5e-35 GATA GATA7 GATA transcription factor 7 (.1) AT3G54810 129 / 8e-35 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037572 [exp] 521 / 0 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10038273 [exp] 327 / 4e-112 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10025829 [exp] 323 / 1e-110 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10028178 [exp] 173 / 3e-52 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10023684 [exp] 128 / 9e-36 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10037994 [exp] 129 / 1e-34 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10009227 [exp] 129 / 3e-34 AT3G54810 162 / 8e-47 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10011762 [exp] 125 / 5e-34 AT3G24050 174 / 1e-53 GATA transcription factor 1 (.1) Lus10031096 [exp] 116 / 3e-32 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188500 [exp] 290 / 1e-97 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.018G044900 [exp] 261 / 3e-85 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1) Potri.006G237700 [exp] 247 / 6e-80 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.014G058600 [exp] 162 / 3e-48 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.002G142800 [exp] 160 / 7e-48 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.009G123400 [exp] 155 / 8e-45 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2) Potri.007G016600 [exp] 151 / 9e-43 AT3G51080 179 / 2e-53 GATA transcription factor 6 (.1) Potri.004G161500 [exp] 145 / 6e-41 AT5G66320 178 / 2e-53 GATA transcription factor 5 (.1.2) Potri.005G117600 [exp] 144 / 1e-40 AT5G66320 236 / 2e-75 GATA transcription factor 5 (.1.2) Potri.010G223300 [exp] 131 / 2e-35 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10011430 pacid=23182641 polypeptide=Lus10011430 locus=Lus10011430.g ID=Lus10011430.BGIv1.0 annot-version=v1.0 ATGCAGGCGCCTGAATTCTTCACCACCGCCAGCTACTACGGCGGCGACCAGTCTCATTTCGCTGTCGACGACCTCCTCAATTTCCCCAACGAAGGCGACG CCATCATGTCCGACGGCTTCTTCGACTCCATCGCCAAAACTCGCGCCGGCGATTCTCCTGCTTTCACCCCCAACCACAGCTCCAACTCCTCCTCCTCCAC CTCCGCCGCCGCGGCCTCCTACCGGAACGCCGCCGATTCTCACTTCTCCACCGAGCTCTGCGTTCCGTATGATGACATGGCTGAGCTGGAATGGCTATCA AATTTTGTGGACGAGTCATACTCAATGGACCCCACCCTAGAGACCAACCTCCACATGCTACAAATCGGGTCAAAACCAACTGCAACTGAGTCGACCGACT CGGAGCCATCGGTTCGTAATGCGAACAATGCGATGTTCCATAATGAAAACCCGTTGCCCGGGAAGGCTCGGTCCAAGCGGTCCAGAGCTGCTCCGGGGAA CTGGACCGCTCGTCTCCTCCACCTCACGCCATCGACCAAGGGATCCGATAGCAATCCGAACCCTGCCTCACACCCGAGCCGAAAAGGTGCGGGATCGGGT GTGAGGAGGTGTCTCCATTGTGCGACTGAGAAGACACCACAATGGCGGACCGGGCCGATGGGCCCGAAAACGTTGTGCAACGCGTGCGGGGTTCGGTACA AGTCGGGCCGGTTGGTACCGGAGTATCGGCCCGCAGCTAGCCCTACGTTTGTACCGGCAAAGCATTCGAATTCGCATAGGAAGGTTGTTGAGCTTAGAAG GCAGAGGGAAGCGGCTGCACATCAGGAGCAGTTGATCAGTCAGAGTTCGATTTTTGGAGCATCCAACGGTGGAGATGAGTTCTTGGTCCATCACCACCAT CACCATTTTAGGCACATGATCTAG
AA sequence Show only first row Show all	>Lus10011430 pacid=23182641 polypeptide=Lus10011430 locus=Lus10011430.g ID=Lus10011430.BGIv1.0 annot-version=v1.0 MQAPEFFTTASYYGGDQSHFAVDDLLNFPNEGDAIMSDGFFDSIAKTRAGDSPAFTPNHSSNSSSSTSAAAASYRNAADSHFSTELCVPYDDMAELEWLS NFVDESYSMDPTLETNLHMLQIGSKPTATESTDSEPSVRNANNAMFHNENPLPGKARSKRSRAAPGNWTARLLHLTPSTKGSDSNPNPASHPSRKGAGSG VRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVPAKHSNSHRKVVELRRQREAAAHQEQLISQSSIFGASNGGDEFLVHHHH HHFRHMI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	0	1
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10037572 [exp]	1.4	0.9885
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	1.7	0.9891
AT3G19990			unknown protein		Lus10028680 [exp]	4.2	0.9880
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	4.5	0.9789
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	4.7	0.9670
AT3G01516			unknown protein		Lus10014544 [exp]	5.0	0.9627
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	5.7	0.9842
AT5G54370			Late embryogenesis abundant (L...		Lus10033540 [exp]	6.3	0.9838
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	6.5	0.9827
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10043240 [exp]	6.8	0.9667

Compare expression of checked genes

Lus10011430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.