Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16310 433 / 2e-153 mitotic phosphoprotein N' end (MPPN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037573 [exp] 593 / 0 AT3G16310 459 / 3e-163 mitotic phosphoprotein N' end (MPPN) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188300 [exp] 447 / 1e-158 AT3G16310 468 / 3e-167 mitotic phosphoprotein N' end (MPPN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF05172 [flax] [poplar] Nup35_RRM Nup53/35/40-type RNA recognition motif
Representative CDS sequence Show only first row Show all	>Lus10011431 pacid=23182633 polypeptide=Lus10011431 locus=Lus10011431.g ID=Lus10011431.BGIv1.0 annot-version=v1.0 ATGAGCAGTGCAGTGCGTAAAACTCCCAGGTCGGCTGGGAGGCAGTCGTTGTTCTTCCAAGATTTGGCATCTCCAATCTCCACCCACAAAGGGAAGTTCT CAAGTCCAGGCCAGGCAGCTGCAGTTTCTGCATTATGGCGTGATAATTTAGGTGGCTCAGATCTCCCGCCCCCTCCTATGTTCACCTTGGAGGATCGTTC AGATTTCTCTCCTGAGTCCGGTATCCCGGATTACCCTATATCTCCAGACGCCAGATTAGACCCACGAACTCCTTCTCAAGGCTATGGGAGGGAACTGGTG ACTCCGACAAAAGGGAAATCAGAGGCTAGCAGCTCTTCATTTGCGTTGATGAGCGGCCAGAAAGTTCAGCAGGGTTCAGGAAGTTCGAATTGGTGGTCAC CTGCAAAGGGTTCTATTACTGATCATGAAGATAAGGAAAAGAATTCTCCAGTTGAGGGTGTGGTCCAAAGCAATGCTTTGATTACACTTCCACCACCCAT GGAAGTTGCGAGGCCAGAAATTCAGAGAAACCAATTTCCTACAGCAAACTTCGATGAAGAAGAATGGGTTACCGTTTATGGATTTCCTCCCAGTGAAACA AACTCTGTGTTGCGGGAGTTCGAGAAATGTGGCGTCATATTGAAACATGTCCCTGGTCCCGGTAATGCGAACTGGATGCACATTCTTTATCAGAATCGGT CTGATGCACGTAAAGCCTTGAGCAAGAACGGAATGCAAATCAACAGACTGCTAATCATTGGTGTGAAGCCAGTGGATCCAATGCAACGCCAAGCTTTGAG TGAAAGACTCGACAATCAGGGATTCATGACCCTGCCTCCACCAGCATCAACTTCGAGTAGAGCAACCGAGTTCAATGCATTGTCGAGACCTGCTTCTCGT CCGTACTATATCCAGAACGGGAGTACGAGTGCTCGACAAACAGGAGGTTCAATCGCTTCCCCGAACAAGTCGCTGGTGTCCAAAGTTTTTGACGTGATGT TTGGGATTTGA
AA sequence Show only first row Show all	>Lus10011431 pacid=23182633 polypeptide=Lus10011431 locus=Lus10011431.g ID=Lus10011431.BGIv1.0 annot-version=v1.0 MSSAVRKTPRSAGRQSLFFQDLASPISTHKGKFSSPGQAAAVSALWRDNLGGSDLPPPPMFTLEDRSDFSPESGIPDYPISPDARLDPRTPSQGYGRELV TPTKGKSEASSSSFALMSGQKVQQGSGSSNWWSPAKGSITDHEDKEKNSPVEGVVQSNALITLPPPMEVARPEIQRNQFPTANFDEEEWVTVYGFPPSET NSVLREFEKCGVILKHVPGPGNANWMHILYQNRSDARKALSKNGMQINRLLIIGVKPVDPMQRQALSERLDNQGFMTLPPPASTSSRATEFNALSRPASR PYYIQNGSTSARQTGGSIASPNKSLVSKVFDVMFGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16310			mitotic phosphoprotein N' end ...		Lus10011431 [exp]	0	1
AT1G60620		ATRPAC43	RNA polymerase I subunit 43 (....		Lus10018468 [exp]	2.2	0.9498
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	5.2	0.9325
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	5.5	0.9295
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10005804 [exp]	5.7	0.9205
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10017153 [exp]	6.3	0.9378
AT5G42960			unknown protein		Lus10007162 [exp]	7.7	0.9318
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10043154 [exp]	8.8	0.9185
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	11.8	0.9247
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10037454 [exp]	13.2	0.9276
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10015806 [exp]	14.7	0.9232

Compare expression of checked genes

Lus10011431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.