Plant FIBer expression Database

Lus10011434 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03120 100 / 4e-26 C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037576
[exp]
104 / 1e-27 AT4G03120 178 / 1e-56 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G058400
[exp]
100 / 2e-26 AT4G03120 163 / 1e-50 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF06220 zf-U1 U1 zinc finger
Representative CDS sequence
>Lus10011434 pacid=23182655 polypeptide=Lus10011434 locus=Lus10011434.g ID=Lus10011434.BGIv1.0 annot-version=v1.0
ATGCCTCGGTATTACTGTGACTACTGCGATACTTATTTGACTCACGATTCGCCTTCTGTTAGAAAGCAGCATAATGCGGGGTACAAGCACAAGGCGAATG
TTAGAACATACTACCAGCAGTTTGAAGAGCAGCAGACGCAGAGCTTAATCGACCAGCGGATCAAAGAACATCTAGGTCAAGCTGCAGCATTCCAACAGGT
TGGTGGTGCTTTCAACCAGCATCTGTTGGCTCAACGACCTCGCCTTCCGATTTTGCCAACACCTATGATGCCGATTCCCGGGAACCCTAATCTACCTCCC
GGTGCGCCTTTGCTTCCCGGAATGAGGCCTCCTCTTTTGCCTAGACCCGGCATGCCTCCTGGTTATATGCAGGCTCCAGGTATGCCTCCGATGATGGCAC
CACCTGGTGCTCCTTCCTTCCCTGGTCAAGTTAACGGCGGAGGCCCCCCTAGACCTCCTCCAGGAATGGTTCCAACAACTGCTCCTGGTAGTACACCGAT
GCCGGCTGGTTCAGGTCCTTCACCCTCAATGGCTCCCCTCCCGAATTATCAACCGAGTACAACAGCTCCTGCAAGTGGAGGATACGAGAGTTACAATGCC
AATCCACCAGCTTCTGAAGTTCAAAATTAG
AA sequence
>Lus10011434 pacid=23182655 polypeptide=Lus10011434 locus=Lus10011434.g ID=Lus10011434.BGIv1.0 annot-version=v1.0
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGGAFNQHLLAQRPRLPILPTPMMPIPGNPNLPP
GAPLLPGMRPPLLPRPGMPPGYMQAPGMPPMMAPPGAPSFPGQVNGGGPPRPPPGMVPTTAPGSTPMPAGSGPSPSMAPLPNYQPSTTAPASGGYESYNA
NPPASEVQN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G03120 C2H2 and C2HC zinc fingers sup... Lus10011434
[exp]
0 1
AT5G43970 ATTOM22-V, TOM2... TRANSLOCASE OUTER MITOCHONDRIA... Lus10024950
[exp]
2.6 0.9284
AT2G20820 unknown protein Lus10031625
[exp]
7.7 0.9138
AT5G40190 RNA ligase/cyclic nucleotide p... Lus10039437
[exp]
8.9 0.8834
AT2G33730 P-loop containing nucleoside t... Lus10015187
[exp]
10.0 0.8972
AT1G61150 LisH and RanBPM domains contai... Lus10011219
[exp]
11.3 0.8878
AT5G13780 Acyl-CoA N-acyltransferases (N... Lus10016378
[exp]
14.5 0.9094
AT1G24265 Protein of unknown function (D... Lus10011347
[exp]
15.7 0.8786
AT1G32580 plastid developmental protein ... Lus10011789
[exp]
15.7 0.8937
AT5G19570 unknown protein Lus10012977
[exp]
16.7 0.8608
AT2G15000 unknown protein Lus10020971
[exp]
17.4 0.8620

Lus10011434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.