Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 130 / 1e-37 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 116 / 3e-32 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 105 / 1e-28 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G15960 104 / 2e-27 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 102 / 4e-27 ATSEH soluble epoxide hydrolase (.1) AT2G26750 100 / 2e-26 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 83 / 7e-20 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037559 [exp] 219 / 2e-72 AT4G02340 367 / 2e-127 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 217 / 2e-71 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 214 / 3e-70 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 124 / 2e-35 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 122 / 6e-35 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 122 / 2e-34 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 120 / 4e-34 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10009859 [exp] 118 / 9e-34 AT4G02340 349 / 6e-122 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 115 / 4e-32 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 136 / 3e-40 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 136 / 8e-40 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 132 / 9e-39 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 119 / 2e-33 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 116 / 2e-32 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 113 / 3e-31 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 110 / 3e-30 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 92 / 4e-24 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 84 / 5e-20 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 54 / 2e-09 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011435 pacid=23182649 polypeptide=Lus10011435 locus=Lus10011435.g ID=Lus10011435.BGIv1.0 annot-version=v1.0 ATGGTGCCCAAAGAAACAGGACTCAAAGGGTTACCAGATCCACCAACCTCATTCCTCCCATGGCTGCCGGAAGAAGACGTGGATTACTACGCGTCCCAGT TCAGCAAGACCGGGTTCACCGGAGGACTCAACTACTACCGAGCCTTCTCCCTCACCAGGGAACTGATGGGGCCATGGTCAGGAGGAGATTGCAAGTATCA AGTCCCGGCTAAGTTCATCATTGGGGATCAAGACGTTTGCTACCACATGCCTGGGATGAAGGACTACATACATGGTGGAGAGTTTAAGAAGGAAGTTCCG ATGCTCGAAGAAGTCGTGGTCATGGAAGGGGTGCCGCATTTCGCGAACCTGGTCAAGCCGGAGGAGGTCACTCGGCACATCGTCGACTTCATCAAACGTT TCTGA
AA sequence Show only first row Show all	>Lus10011435 pacid=23182649 polypeptide=Lus10011435 locus=Lus10011435.g ID=Lus10011435.BGIv1.0 annot-version=v1.0 MVPKETGLKGLPDPPTSFLPWLPEEDVDYYASQFSKTGFTGGLNYYRAFSLTRELMGPWSGGDCKYQVPAKFIIGDQDVCYHMPGMKDYIHGGEFKKEVP MLEEVVVMEGVPHFANLVKPEEVTRHIVDFIKRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011435 [exp]	0	1
AT2G22590			UDP-Glycosyltransferase superf...		Lus10043446 [exp]	5.6	0.7803
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10005717 [exp]	9.4	0.7719
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	18.2	0.7717
AT1G61100			disease resistance protein (TI...		Lus10025112 [exp]	19.7	0.7614
AT1G48320			Thioesterase superfamily prote...		Lus10036869 [exp]	20.5	0.7637
AT5G39960			GTP binding;GTP binding (.1)		Lus10033794 [exp]	22.6	0.7447
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	23.7	0.7551
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018547 [exp]	26.5	0.7432
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	32.9	0.7476
AT1G74400			Tetratricopeptide repeat (TPR)...		Lus10002903 [exp]	33.2	0.6848

Compare expression of checked genes

Lus10011435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.