Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48120 802 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037557 [exp] 1808 / 0 AT5G48120 775 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G048800 [exp] 1103 / 0 AT5G48120 991 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF12460 [flax] [poplar] MMS19_C RNAPII transcription regulator C-terminal
Representative CDS sequence Show only first row Show all	>Lus10011436 pacid=23182640 polypeptide=Lus10011436 locus=Lus10011436.g ID=Lus10011436.BGIv1.0 annot-version=v1.0 ATGGCGGAACCCAGCCAGCTGACCCGCCACATTGAATCCTATGTCGACGTCTCACGCTCCTCCGCCCAGCAGGGTGCAAGTTTGGATTCAATTGTTGCGC TCTTGAATAATGATGTAATTACTATATCATCACTGGTTAAGGACATGGGGATGTACTTAACAACTACTGACCACGTAATTCGAGCAAGAGGTACTCTTCT TTTGGGAGAGGCTCTTATCAAGTTATGTTCAAAGCCACTGGAGAATGCTACTGTGCATAGCTTGATAACATTTTTCGCAGAAAGACTGGCAGATTGGAGA GCTTTACGTGGCGCTCTTGTTGGCTGCTTGGCACTGATGAGAAGAAATAGTTGTGGTGTAGTCGATGCAGATGATGCAGTGGTGGTTGCGAAGCTTTATG TAGAATTTCTACAAGTGCAATCTTTGGCACAGCATGACAGGAAGCTTTCCTTTGAGCTATTGGAGTGTCTTCTGGAGCGCCATCCTCATGTTGTTACTTC AGTGCAGGACTTGTATTTTATTGATAGAATCTGTGAAGATATTGAAGGGGAAAAGGATCCTGAGTGCCTAATGCTAACATTCCATATTGTGGAACTTCTG GTGAAAGCGCATCCAAATACTTCTGGTCTGGTTTCTAATGACATCGGTGAACTCTTCAACATTTTGAGCTGCTACTTTCCCATCCATTTTACACATTCAA TATCATCAGCATTTTGTTGCTCGTTTGCTCAGCCAAAAACAGAAGAAGGCAGTGTGGGAAAGGATGATCTCTCAACAGCACTCATGATGGCATTTTCTGC AACACCTCTTTTTGAACCCTTTGTTGTTCCATTGCTGCTCGAGAAACTTTCTTCATCCCTACTGTCAGCAAAGGTTGATTCTTTGAAGTTTCTAAATTAC TGCGCGCAAAAATATGGCAGAGATAGAATGGGAAAACATGCTACAGTTATTTGGTCTTCCTTAAAGGACACAATATATACAACAAAACCAGAGCCTCCTT TATCTTTCACTTCAGATTCACCGGATAGTCCAGCTGCTAAGGAGAATGAGATATTCACTGAAGCTTTTGGATTGTTGGAAAAGTTCATCTCCTTAGACAA AAGCAACGAGCCATTTCTCAATTTAGTTATTGGTGACAATGGCATTAACTCGGTTTTCAATACCATATCTAGTTATAGCAGCTATGAAGAGACTTCCATT GAAGACAGGCAGAAATTGCTTATCATTGGTCGTATCTTGTACGTCTCTGCAAAATCCTCTGTTTCATCCTGCAAAGGAGTCGTTGAATGTTTCTTACCTC GCCTGATGGAGGATTTGGAGCTCTCGCTGGATAGAGCTTCTTGTTATTGCAATACAAATGGCGTTGTTTTCTCTAGAAAGACAAGCTTTGGGTCTCTTTA TCTGTTAACTGAACTTCTCAAGGGATGCAGAGATTTGGGGATCAGTAAAGAGGATCTTGCATTGCAAATTGATATCCAAAATGACACTTGGTGCTGCTTG CTTCAATGTTTATGTGGGCCTTTGAGCGAGGCCTTTAGTTCTATCTCGGCGAAGTACAAAAATGAACCTGCTAATGAAGTTTATCTACATCTTGCTGTAA GAGGCCTGCAGGCACTTGCTTTATTGCCAGGAGGCTCTTTGATAGTCCCAAATTCAACTTTTGAAGATATTTTGGAGAAACTCGTCTCGATTGTTGCAGA GGATTCCAGCAACATAATACTGTGGAAGCTAGCATTGAATGCACTGGTCCATATTGCTACATTCATTCAGAAGTTTGATGAGCCAGATAAAGAAATGAGA TACATGAATGTCGTTGTTGAGAAACTTGTTCCCATGGTGTCATCTAATGAGTCTAATTTACCATTTCCCCTCAAACTGGAAGCCTTATCCCATGTTGGCA GAAGTAGCTTTAAATATATGCGGAGGATTCTCCTACAACTGGAAGACATTACATCGACAAGTCTGATTGCTGTTTATGCAGAAGGTAATCTAAGTTTGGC TAAAACTACATGTCAACTTTTGGAATGTTATTCCACTGAGATGATCCCATGGATGCAGACAAATGAAGGATCAGAGGAAATGCTGTTAAAATTTGTTCTA AACATTTGGGAGACAATAGAAGATGGTTTGCCTCTCACTGTCACTGTAAATAATAAAGAGCTTCTTGACGCACTGATTAAAGTGATGAAGCATTCTGTCG CTTGTTGTTCAGTGGATAGCCAGAACGTAATTGTTGATAAAGCTTATAGAGCAGTATCGACAATTACTTCTTTCCCACTAAAGGAGCTATCTCCTATCTT TCCAGCACCTTCGGAAGATTTAAAACAGATTCAAGAAGTAGACAAGTTATCCAACAGGGATGAATTGGTTCTCGCATTATATGCATCGGCGATTATAGGA CTTCATCCGCAGGCTCAAGTTCCAAATCTAAGAACAACTGCACATTTATTTAGGGTTGCCCTCTTCAAGGAAAATGTTAATGCAGCTCAAGCATATGGCT CTCTGGTTAATAAACTGACTCCAAAGTCCAATACACCAGATGACTTGGGGCTGCTTACCATTGACCAGGCAATGGATATGGTTTTGAGTAAAGATTCTCT AGCCTCTTTCGACTTCTATTCAGGAAGTGATAGAATCTACAATGGAACTGGTACCGGTCCTGATTATTTATGCCTCGGTCTTGCCAACAGTGGATTACGG CAGATACATGCCATTGCTGAACTGGCATGGATTGGAAAAGGGTTGCTTCTGCGTGGTCATGAACGAGTTAAAGACATAGTTATGGTTCTCCTGAAGTGTC TATTGGATTATGGAAACACAAGTTCATTGCCACTGGAACAAGATTCGTCTGATATCATAGAAAAAGTATGTCCATTTGTGGCAGAAGCTGCTGCTGATGC ATTTCAAATTCTCATTAGTGATTCAGATCATTGTTTAAACCGTAAGTTTCACGCGATAGTACGGCCTCTTTATAAGCAAAGGTTCTTCTCTACCATGAGG CCTGTACTGGAATCTCTAATCGTTAAATCCAAGTCATCATTGTCCAGACGACTGCTATACCGTGCTTTTGTGCATGTTATATCAGAAACTCCTCTTGTGG CTATCTTAAACGATTCCGTAAAGTTAGTTTCATTGTTGGTGGATGGCATAAGCTATCTAAGTAAGGATGCTTCAGATAAAGATGTTTTATGCAGTCTCCT GCTCGTATTATCAGGAATATTGACAGATAATAGTGGGCAAGAAGCTGTTATAGAAAATGCACACGTCATCGTCAATTGCCTAGTTGACCTTATCACGTAT CCTCACAGAATGGTTGTTCGGGAGACTGCAATTCAGTGTCTAACCGCGATGTCGCAGCTGCCTTACCCAAAGATTTACCCCAGAAGGGTTCAGGTGTTAC AAGCTGCGTCACGAGCTCTAGACGATCCAAAGAGAGCTGTTCGTCAAGAAGCTGTCAAGTGCCAGCAAGCATGGGCTTCTATCGCGTGA
AA sequence Show only first row Show all	>Lus10011436 pacid=23182640 polypeptide=Lus10011436 locus=Lus10011436.g ID=Lus10011436.BGIv1.0 annot-version=v1.0 MAEPSQLTRHIESYVDVSRSSAQQGASLDSIVALLNNDVITISSLVKDMGMYLTTTDHVIRARGTLLLGEALIKLCSKPLENATVHSLITFFAERLADWR ALRGALVGCLALMRRNSCGVVDADDAVVVAKLYVEFLQVQSLAQHDRKLSFELLECLLERHPHVVTSVQDLYFIDRICEDIEGEKDPECLMLTFHIVELL VKAHPNTSGLVSNDIGELFNILSCYFPIHFTHSISSAFCCSFAQPKTEEGSVGKDDLSTALMMAFSATPLFEPFVVPLLLEKLSSSLLSAKVDSLKFLNY CAQKYGRDRMGKHATVIWSSLKDTIYTTKPEPPLSFTSDSPDSPAAKENEIFTEAFGLLEKFISLDKSNEPFLNLVIGDNGINSVFNTISSYSSYEETSI EDRQKLLIIGRILYVSAKSSVSSCKGVVECFLPRLMEDLELSLDRASCYCNTNGVVFSRKTSFGSLYLLTELLKGCRDLGISKEDLALQIDIQNDTWCCL LQCLCGPLSEAFSSISAKYKNEPANEVYLHLAVRGLQALALLPGGSLIVPNSTFEDILEKLVSIVAEDSSNIILWKLALNALVHIATFIQKFDEPDKEMR YMNVVVEKLVPMVSSNESNLPFPLKLEALSHVGRSSFKYMRRILLQLEDITSTSLIAVYAEGNLSLAKTTCQLLECYSTEMIPWMQTNEGSEEMLLKFVL NIWETIEDGLPLTVTVNNKELLDALIKVMKHSVACCSVDSQNVIVDKAYRAVSTITSFPLKELSPIFPAPSEDLKQIQEVDKLSNRDELVLALYASAIIG LHPQAQVPNLRTTAHLFRVALFKENVNAAQAYGSLVNKLTPKSNTPDDLGLLTIDQAMDMVLSKDSLASFDFYSGSDRIYNGTGTGPDYLCLGLANSGLR QIHAIAELAWIGKGLLLRGHERVKDIVMVLLKCLLDYGNTSSLPLEQDSSDIIEKVCPFVAEAAADAFQILISDSDHCLNRKFHAIVRPLYKQRFFSTMR PVLESLIVKSKSSLSRRLLYRAFVHVISETPLVAILNDSVKLVSLLVDGISYLSKDASDKDVLCSLLLVLSGILTDNSGQEAVIENAHVIVNCLVDLITY PHRMVVRETAIQCLTAMSQLPYPKIYPRRVQVLQAASRALDDPKRAVRQEAVKCQQAWASIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	0	1
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	1.0	0.9458
AT1G42440			unknown protein		Lus10030752 [exp]	1.4	0.9397
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10024826 [exp]	3.5	0.9231
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	3.5	0.9251
AT1G26170			ARM repeat superfamily protein...		Lus10035079 [exp]	3.7	0.9218
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10018978 [exp]	3.7	0.9101
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	4.5	0.9240
AT5G43100			Eukaryotic aspartyl protease f...		Lus10019309 [exp]	5.0	0.8969
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003576 [exp]	5.7	0.8922
AT5G59980			Polymerase/histidinol phosphat...		Lus10028138 [exp]	5.7	0.9133

Compare expression of checked genes

Lus10011436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.