Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79830 772 / 0 GC5 golgin candidate 5 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037556 [exp] 1585 / 0 AT1G79830 910 / 0.0 golgin candidate 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052100 [exp] 946 / 0 AT1G79830 944 / 0.0 golgin candidate 5 (.1.2.3.4) Potri.001G185050 [exp] 917 / 0 AT1G79830 986 / 0.0 golgin candidate 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12325 [flax] [poplar] TMF_TATA_bd TATA element modulatory factor 1 TATA binding PF12329 [flax] [poplar] TMF_DNA_bd TATA element modulatory factor 1 DNA binding
Representative CDS sequence Show only first row Show all	>Lus10011437 pacid=23182635 polypeptide=Lus10011437 locus=Lus10011437.g ID=Lus10011437.BGIv1.0 annot-version=v1.0 ATGGCGTGGTTTAGCGGGAAAGTTTCGTTGGGGAACTTGGATCTGGCTGGGGCGGTGAACAAGCTCAGCGAGAGCGTCAAGAATATTGAGAAGAATTTCG ATAATGCTCTTGGTTTCGAAGAGAAGCCTTCTTCCTCCGATTCGTCCCCCAACGCTGAAGGACTATGGCCAATGATGTCATGGAACAAGGGTGAGGATGT TGATGAAGAGTCTACGGGGGAAACAAAATCACCTCAGAAATCATCTATTGATGAGGATTCCAAAGAGGAGGATAGTTCAAATGAACCTACAGAGAAAACA GTTTCTCCTCAGAAATCATCGACTGTCAATGAAAGTCGTGACAGTGAGAATGGTGATGCCGAGTCAACAAAGAAAAATGGTTCTCCTCATTTATTGCTTG TTGATTCTTCTGAAAAAGTTCAATCTCCACAGAGATTGTCCTCTTCTGAAGATCAAGAGATGCGGAAATCGGCGTCTGCGGACAGTTCTCCTCAGGAAGA CGAGGAACTTGAGACCCGGAGAGCTGATGAGCATCTGGAGACTGCTGAAAGAGAAGCAAAGACTTCAGAACCTGGAATAGAGGATTTGCAAAATCAATCA CAAACAATCCCGGCTGAACAAGTTGACTCTGAGATAAAACCGTTGGATTCTGTTGTTGATCGACAAGATAGTGAAGTCTCGGGATCGCAGGCTGCTGAAA TTTTGGATTCAATGAATTCTAATAGTGAAGCTGTTGAACCAGGTCCGGCGGGGGACGTATCCATAGCTCAAGGGGAGCTAAGGGAATCAATTGAAATGCA TCCAAGTGAAAATGAGGGAAAAAAAGAAGAGATTTCAGAGGGAAGTCTAGCTGACGCTGAAAGGTCAAGTCAACCTGAGGCATTCAGTGATGGCCCAACC GGTGTGAGAGTTGAGCAATCTGATTTACAGCCTGTGGTTGACAAAGAAGGTGAAGTTGATCATGAAGCTTCCGTGTCCTCTGGACTTTCATCAGAAAGGG CATCTGATGCATCGATTTCCAATGTAAATAGTATTGACATTATGGCAGTTGGCATGGAAAAGCAAGTTCATGATGGAAGGGTTGATGTTGAAGGGATAAA CTTGGATGTTGGATTACACTCATCTACTTCCATGCATTATGACCTTGAACTTGAAAAGTTGAAGAAGGAGATGCATATGATGGAAGCTGCGTTGCAAGGT GCTGCAAGGCAAGCTCAGGCAAAAGCAGATGACATAGCAAAACTGATGACTGAAAATGAGCACCTGAAAAGTTTGATTGAGGATTTGAAGAGAAAGTCGA ATGATGCCGAGATTGAATCTTTGAGAGAGGAATACCATCAAAGAGTCGCAACTCTGGAAAGAAAGGGTGATTTGGAACCTTTAACTTACCATGGAAATGG TGGCATTATGGTCTATTCTGCTCTCTGTTTGTTTATGGTCTATGCCCTAACAAAGGAGAGAGACACACTGCGTAGAGAGCAAAATAAGAAAAGTGACGCA GCTGCTCTACTAAAGGAAAAAGACGAAATTATTACTCAGGTTATGGCTGAAGGGGAAGAACTTTCGAAAAAGCAGGCTGCCCAGGAATCTACTATCAGGA AATTAAGAGCTCAGATCAGAGAACTTGAGGAAGAGAAGAAAGGTTTGACTACCAAACTTCAGGTTGAAGAGAACAAAGCAGAAAGTATCAAGAAGGACAA GACAGCTACTGAGACACTGCTGCAAGAAACAATTGAAAAGCACCAAGCAGAACTTGCGGCACAGGAAGAATACTATACAAATGCTTTGACTGCGGCAAGA GAAGCCAAGGCATTGGCTGAGGCACGTGTCAACAGTGAAGCCAGAGTTGAATTAGAGAATCTTCTAAGAGAGGCAGGAGAACGTGAGACTATGCTGGTTC AGGAACTGGAAGAATTAAGGCAAACATTGAGTAGAAAGGATCAGCAGGCTGTTTACATGGAAGACATGCACCGGAGAGAGATTGAAGATCTTCAAAAACG TTATCAAGCAAGTGAGAGGCGGTGTGAGGAATTAGTTTCTCAAGTTCCCGATTCCACAAGGCCTCTTCTTCGACAGATTGAAGCCATGCAGGAAACAATG TCCAGAAGGGCTGAAGCTTGGAATGCTGTGGAGAGGTCACTAAGTTCTCGTCTTCAGGAAGCAGAGTCCAAAGCTGCAGCTGCTGAGGAAAAGGAACGAT CTATGAATGACCGTTTGTCTCAAACCTTATCTAGGATTAATGTTCTGGAAGCTCAGATTTCATGTCTTAGAGCAGAACAGACACAATTAAGTAAGTCAAT TGAAAAGGAGAGGCAAAGGGCAGCTGAAAATAGGCAAGAGTATCTTGCCGCCAAGGAGGAAGCTGACACTCATGAAGGACGCGCAAACCAATTAGAAGAA GAAATTAAAGAACTTAGACGAAAGCATAAACAAGAATTACAAGAAGCACTTGTGCAGAAGGAGAGATTACAACAGTGGTCAGCTGCATTTTGGCAGTTTG AGCAGTGTACAGCATTAGCTGCTTGTGAAGAGGTTGAGAAGGAGAAAGCAGCTCGGTTGGATTTAGAACGAACAAAGTGTCTCCAATCGGCTGGTTCACT TGACCATACACCTATTGCTAGGACTCAATCAGCCGTTGAAAATGGCCACACGAACCGGAAACTCTCAAATGCTGGCAGTGTGGAGGAGAGCTATTTTCTG CAAGCGACTTTGGATGCATCAAACAGTTACACTGATAGGAGAAGTTACACAGAGGCAACTGTGAGCCCCTATTACGTAAAGAGCATGACACCTAGTGCTT TTGAGTCCGCCCTCCGCCAGAAAGAGGGCGAACTTGCTTCATACATGACTCGTTTGGCATCTTTGGAATCAATCCGTGACTCCCTTGCAGAGGAGTTGGT TAAAATGACGGAGCAGTGCGAAAAGTTGAGAGCCGACTCTGCTCTGTTACCTGGGATACGGGTAGAGCTGGATGCACTAAGGCGGAGACACTCTGCTGCC TTGGAATTAATGGGCGAACGTGATGAGGAGCTGGAGGAACTGCGTGCTGATATTGTTGACTTGAAAGAAATGTACAGAGAGCAAGTAAACTTACTTGTGA ACAAGGTAAACGTTGATTGTTTGTTTGATAAAAGTATGCAATGGTAA
AA sequence Show only first row Show all	>Lus10011437 pacid=23182635 polypeptide=Lus10011437 locus=Lus10011437.g ID=Lus10011437.BGIv1.0 annot-version=v1.0 MAWFSGKVSLGNLDLAGAVNKLSESVKNIEKNFDNALGFEEKPSSSDSSPNAEGLWPMMSWNKGEDVDEESTGETKSPQKSSIDEDSKEEDSSNEPTEKT VSPQKSSTVNESRDSENGDAESTKKNGSPHLLLVDSSEKVQSPQRLSSSEDQEMRKSASADSSPQEDEELETRRADEHLETAEREAKTSEPGIEDLQNQS QTIPAEQVDSEIKPLDSVVDRQDSEVSGSQAAEILDSMNSNSEAVEPGPAGDVSIAQGELRESIEMHPSENEGKKEEISEGSLADAERSSQPEAFSDGPT GVRVEQSDLQPVVDKEGEVDHEASVSSGLSSERASDASISNVNSIDIMAVGMEKQVHDGRVDVEGINLDVGLHSSTSMHYDLELEKLKKEMHMMEAALQG AARQAQAKADDIAKLMTENEHLKSLIEDLKRKSNDAEIESLREEYHQRVATLERKGDLEPLTYHGNGGIMVYSALCLFMVYALTKERDTLRREQNKKSDA AALLKEKDEIITQVMAEGEELSKKQAAQESTIRKLRAQIRELEEEKKGLTTKLQVEENKAESIKKDKTATETLLQETIEKHQAELAAQEEYYTNALTAAR EAKALAEARVNSEARVELENLLREAGERETMLVQELEELRQTLSRKDQQAVYMEDMHRREIEDLQKRYQASERRCEELVSQVPDSTRPLLRQIEAMQETM SRRAEAWNAVERSLSSRLQEAESKAAAAEEKERSMNDRLSQTLSRINVLEAQISCLRAEQTQLSKSIEKERQRAAENRQEYLAAKEEADTHEGRANQLEE EIKELRRKHKQELQEALVQKERLQQWSAAFWQFEQCTALAACEEVEKEKAARLDLERTKCLQSAGSLDHTPIARTQSAVENGHTNRKLSNAGSVEESYFL QATLDASNSYTDRRSYTEATVSPYYVKSMTPSAFESALRQKEGELASYMTRLASLESIRDSLAEELVKMTEQCEKLRADSALLPGIRVELDALRRRHSAA LELMGERDEELEELRADIVDLKEMYREQVNLLVNKVNVDCLFDKSMQW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	0	1
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	2.0	0.8634
AT4G01810			Sec23/Sec24 protein transport ...		Lus10010078 [exp]	3.7	0.8114
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017652 [exp]	5.7	0.8093
AT5G61530			small G protein family protein...		Lus10032491 [exp]	6.7	0.8409
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036214 [exp]	6.7	0.8101
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	7.5	0.8372
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10032478 [exp]	8.5	0.8070
AT4G31860			Protein phosphatase 2C family ...		Lus10042416 [exp]	9.1	0.8493
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	11.3	0.8181
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	13.4	0.8038

Compare expression of checked genes

Lus10011437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.