Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80550 460 / 2e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 206 / 3e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 159 / 3e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15200 158 / 4e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 146 / 1e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74900 137 / 8e-36 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G80880 138 / 1e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20300 135 / 2e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 134 / 5e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 134 / 6e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037555 [exp] 795 / 0 AT1G80550 460 / 4e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 203 / 7e-59 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031837 [exp] 182 / 9e-52 AT3G15200 499 / 2e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 163 / 1e-44 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039021 [exp] 160 / 8e-44 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 152 / 9e-41 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041669 [exp] 151 / 2e-40 AT1G80880 511 / 2e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030887 [exp] 149 / 1e-39 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 145 / 1e-37 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G147200 [exp] 509 / 7e-180 AT1G80550 547 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 220 / 2e-65 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G115500 [exp] 177 / 1e-49 AT3G15200 546 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 159 / 2e-43 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G066700 [exp] 155 / 1e-41 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 152 / 8e-41 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 150 / 7e-40 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 147 / 2e-39 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 145 / 1e-37 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G079400 [exp] 135 / 2e-34 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011439 pacid=23182583 polypeptide=Lus10011439 locus=Lus10011439.g ID=Lus10011439.BGIv1.0 annot-version=v1.0 ATGGCTCTGAGATTAACGACCAGGAAGCTCGGCAGCAAGTTCTTGCCTATGCTTTCTGCATTTTCTTCCCTCCATTCGCACGCGCCGCCTTCTCATATGG ACGTGCTCGAGAAGCTGAAGCTTCAGTCCAACGACTGGAAAACGGCTCTGGACTACTTCACTTCCGTCGAGAATGAATACCGGTTCACTCACACCACAGA GGCATTTAATTGCATGATCGGCATCCTCGGTAAGTTCTTCGAATTCGACCTCTCATGGCGATTAATCGAGAGAATGCCGAACCCTAATCACGCCACATTC CGTGTACTGTTTAAGCGCTATGTGTCCGCTAAACTAGTCCAGGAAGCTTTGCTTGCTTACCAGAGGTCGGGAGAGTTTAATCTGAGGGACGAGACTTGTT ATAGCTATCTTGTGGACGCACTTTGCGAGTACAAGCACGTTAGCGATGCTGAAGAGTTCTTGTTTGGGAAGAAACCGAAACCTAGTGGTGATGATGATGA GATTGCGGTGGTTATGGCGAATTCGACTAAGGTTCATAACATGATTTTGCGAGGGTGGTTTAGGATGAACCGGTTTGGGAAATGTAGAGAGTTCTGGGAG GAAATGGATAGGAAGGGAGTGGACAAGGATTTGCATTCTTATTCTGTCTACATGGATATAATGTGCAAGAGTGGGAAGCCGTACAAGGCTGTGAAGCTGT ATAAAGAGATGAAGATGAAGGGGATAAAGTTGGATGTCGTTGCTTATAATACCACGATTCTAGCGGTTGGAATGTCGCAAGGTGTGGATTCCACCACGAG AGTTTATCGCGAGATGAAGGAGATGGGCTGCGAACCGAATGTTGTGACTTGTAACACCATGGTGAAGCTTTTGTGTGAGAATTCGAGGAAGGAGGAAGCG TATGAGTGGCTTGATAAGATGGGGAAGGAAGGTATCCGTCCGGATGTGATGACATATCATTGTTTTTACCGTTCTCTTGATGATCCGAAGATGATTCTTC AGCTGTTCGATGAGATGCTTCAGAATGGAGTTGAGCCGACGATGAACACTTTTGTGATGCTCCTCAAGAAGTTTGGGAAATGGGGATTCCTTAGGCCCGC CTCTATTGTCTGGTCGAAGATGCTGGAACTTGGATATAGTCCTGATGAGTCTGCTTACAATGCTTGGATTGATGCTTTAATTGATAAAGGGTTGTTGGAT GAAGCTTGGAAGTACAATCAAGAGATGCGGGAAAAGGGGCTCTCTGCTAAGCGAAGGAAAGTGTTTGAAAGTAGGTCTTTAGAAGGATTACTTTTGCATA TGAAATGA
AA sequence Show only first row Show all	>Lus10011439 pacid=23182583 polypeptide=Lus10011439 locus=Lus10011439.g ID=Lus10011439.BGIv1.0 annot-version=v1.0 MALRLTTRKLGSKFLPMLSAFSSLHSHAPPSHMDVLEKLKLQSNDWKTALDYFTSVENEYRFTHTTEAFNCMIGILGKFFEFDLSWRLIERMPNPNHATF RVLFKRYVSAKLVQEALLAYQRSGEFNLRDETCYSYLVDALCEYKHVSDAEEFLFGKKPKPSGDDDEIAVVMANSTKVHNMILRGWFRMNRFGKCREFWE EMDRKGVDKDLHSYSVYMDIMCKSGKPYKAVKLYKEMKMKGIKLDVVAYNTTILAVGMSQGVDSTTRVYREMKEMGCEPNVVTCNTMVKLLCENSRKEEA YEWLDKMGKEGIRPDVMTYHCFYRSLDDPKMILQLFDEMLQNGVEPTMNTFVMLLKKFGKWGFLRPASIVWSKMLELGYSPDESAYNAWIDALIDKGLLD EAWKYNQEMREKGLSAKRRKVFESRSLEGLLLHMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80550			Pentatricopeptide repeat (PPR)...		Lus10011439 [exp]	0	1
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10012201 [exp]	5.0	0.8536
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10020011 [exp]	17.5	0.8308
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	17.7	0.8485
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	18.9	0.8312
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10011485 [exp]	19.0	0.8119
AT2G26270			unknown protein		Lus10009795 [exp]	20.0	0.7509
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10023319 [exp]	20.2	0.8141
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	21.6	0.8455
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Lus10002718 [exp]	25.2	0.7826
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10013894 [exp]	30.2	0.8127

Compare expression of checked genes

Lus10011439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.