Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79840 806 / 0 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT4G00730 555 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G21750 548 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 547 / 0 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G04890 543 / 0 HD PDF2 protodermal factor 2 (.1) AT1G05230 525 / 4e-177 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT5G52170 449 / 2e-148 HD HDG7 homeodomain GLABROUS 7 (.1) AT1G73360 441 / 9e-145 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 433 / 5e-142 HD HDG12 homeodomain GLABROUS 12 (.1) AT2G32370 421 / 5e-137 HD HDG3 homeodomain GLABROUS 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037554 [exp] 1347 / 0 AT1G79840 846 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Lus10006765 [exp] 554 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 550 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 548 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10027175 [exp] 541 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10039667 [exp] 538 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10036567 [exp] 507 / 3e-169 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10031321 [exp] 495 / 1e-165 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10027437 [exp] 461 / 7e-152 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052400 [exp] 954 / 0 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.001G184100 [exp] 924 / 0 AT1G79840 946 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.014G075200 [exp] 597 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 579 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.011G025000 [exp] 562 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 560 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.002G230200 [exp] 553 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G152000 [exp] 551 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.012G139300 [exp] 520 / 5e-175 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 513 / 5e-172 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10011440 pacid=23182599 polypeptide=Lus10011440 locus=Lus10011440.g ID=Lus10011440.BGIv1.0 annot-version=v1.0 ATGTCGAATAATCATAATCAAGCTCACCCTGCTCTCTCCCTCAGCCTGGCCGGAATATTCCGCGGCACAGGAAGTACTACTACTCATAATAATGCAGGAA CAGCGGCATGCATTAATGGTGATCAGGTGGAGATTAGCAGCGAGAATTCAGGCGCGGCGATGACTACGAGGAGATCGAATTTGGACGGAGTGGAGTTTGA TGATCATGATGATGATGAGGAGGAGGAGGAAGAGAGTAATGTGGAAGATCGGACCAAGAGGAAGAAGAAGAAGAGGAAGAAGTACCATCGCCATACTCCT GATCAAATCCGCGAAATGGAAGCGCTGTTCAAGGAATCACCGCACCCGGACGAAAAGCAGAGGCAACAACTGAGCAAGCAGTTGGGTTTAGCGCCGCGTC AGGTCAAATTCTGGTTCCAGAATCGCCGCACCCAAATCAAGGCCCTTCAAGAGCGTCATGAGAATTTTTTGTTGAAGGCCGAGATTGATAAGCTCCACGA TGACAACAAGTTCCTCCGTGACACCATTGCCGCCAATGCCTCATCCTCCTCCACCAGCGGCTGCCTCAAATGTGGTGGCGGGGATCATCCTCCTCTTTCC GTTACCGATGACAAACACCTCCGCGTCGAGAACGCCAAGCTCAAAGCTGAGGTGGAGAACCTCCGAGTTTTGGTGGAAAAACACGCGCCACTAGCCGGAA CAGGAACTGCGACAACGAGCTCCGAGAGCAGTGACCATCATCAGCAGCAAAACCAAGAGAGGATATCGATAACTACGACAATGTCACCCGATTTCTACTC GAGGGTATTCGGGCTAGAGAAGGCCAAGGTAAAAGAAGTCGTCAACCAAGCAATGCAAGAGCTCCAAAAGATGGCCAAAGCAAGAGACCCACTCTGGGTC CGAAGTTTCGAGACGGGTCGAGAGATGTTGAACTACGACGAGTATATGAAGCAGTTTGGCGGCGGTGGTTCGAAGGCAAAGGCAGCGAACGTTGAGGCTT CGAGGGATTGCGGGCTCGTGTTTTTTGAATTTCATCGGCTGGTTAACTGTTTCATGGATGTGAATCAATGGAAGGAGATGTTTCCATGGTTGATAGCTAA GGCGGTTACTGCAGATGTCATTTGCGAGGGAGATGGTCGAACCAGAAATGGTGCGGTCCAACTGATGTTTGCAGAGGTTCAAATGCTGACACCAATGGTG CCGACTAGAGAGCTCTATTTTCTGAGGTACTGTAAGCAGCTCAGCGCAGAAGAGTGGGGGATCGTGGACGTCTCCATCGACAAAGTCGAAGAAAACATCG ACATCTCACTCGACAAGTGCAGGAAGCGCCCCTCTGGATGCATCATTCATGATCAATCTAATGGACATTGCAAGGTTGTCTGGGTAGAGCATCTGGAATG CAAGAAAACAGCAGTGAGTTCAATGTACAGGACCATGGTGAATAGCGGGCTAGCCTTCGGTGCAAAGCACTGGCTGTCCGCTCTGCAACTTCAATGCGAG AGGCTTGTGTTCTTCATGGCCACAAATGTTCCTACAAAAGACTCAACAGGTGTTGCGATGTTAGCTGGGAGGAAAAGCATTCTGAGGCTGGCACAGCGAA TGACTTCGACCTTTTGCTGCGCAATAGGAGCTTCAAGCTACCGCACCTGGACCAAGGTCACTTCGAAAACAGGGGAGGACATCAGGGTTTCTTCCAGGAA GAACTTCAATGACCCTGGCGAGCCATTTGGATTGATCCTGTGTGCGGTTTCTTCGGTTTGTTTGCCAGTGTCTCCTCCTGCACTGTTTGATTTCTTATGC GACGAAGGGCGTAGAAATGAGTGGGATATCATGTCAAATGGAGGAGCTGTACAATCGATTGCGAGCTTAGCCAAAGGACAAGACAGAGGGAATGCAGTGA CTCTACAGATGATAAAAGCAGATGAGAACACCACATGGATACTCCAAGATAGCTGCACGAACGCCTACGAATCCATGATAGTATACGCTCCAGTAGATAT TCCTGGAATGAAAACTGTCCTTAGTGGATGCGATTCAAGCAACATATCGATTTTACCTTCCGGATTCTCCATCCTCCACAACGGACTCGACTCGTGGCCA CAGGTGATCACTTCCTTGGAAAAGAACGAAGGATCAGGAGGCTCTTTGCTAACAATGGCATTCCAAATCTTAACGAGTACCCTACCGGCAGCGAAGCTCA CTGTCGACTCGGTTGAGTCTGCTTCTGCACTCGTATCCTGCACATTAAGGAACATTAGAACAAGCTTGGAATGTGAAGAAAACTGA
AA sequence Show only first row Show all	>Lus10011440 pacid=23182599 polypeptide=Lus10011440 locus=Lus10011440.g ID=Lus10011440.BGIv1.0 annot-version=v1.0 MSNNHNQAHPALSLSLAGIFRGTGSTTTHNNAGTAACINGDQVEISSENSGAAMTTRRSNLDGVEFDDHDDDEEEEEESNVEDRTKRKKKKRKKYHRHTP DQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKALQERHENFLLKAEIDKLHDDNKFLRDTIAANASSSSTSGCLKCGGGDHPPLS VTDDKHLRVENAKLKAEVENLRVLVEKHAPLAGTGTATTSSESSDHHQQQNQERISITTTMSPDFYSRVFGLEKAKVKEVVNQAMQELQKMAKARDPLWV RSFETGREMLNYDEYMKQFGGGGSKAKAANVEASRDCGLVFFEFHRLVNCFMDVNQWKEMFPWLIAKAVTADVICEGDGRTRNGAVQLMFAEVQMLTPMV PTRELYFLRYCKQLSAEEWGIVDVSIDKVEENIDISLDKCRKRPSGCIIHDQSNGHCKVVWVEHLECKKTAVSSMYRTMVNSGLAFGAKHWLSALQLQCE RLVFFMATNVPTKDSTGVAMLAGRKSILRLAQRMTSTFCCAIGASSYRTWTKVTSKTGEDIRVSSRKNFNDPGEPFGLILCAVSSVCLPVSPPALFDFLC DEGRRNEWDIMSNGGAVQSIASLAKGQDRGNAVTLQMIKADENTTWILQDSCTNAYESMIVYAPVDIPGMKTVLSGCDSSNISILPSGFSILHNGLDSWP QVITSLEKNEGSGGSLLTMAFQILTSTLPAAKLTVDSVESASALVSCTLRNIRTSLECEEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Lus10011440 [exp]	0	1
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037089 [exp]	1.4	0.9122
AT1G76140			Prolyl oligopeptidase family p...		Lus10034558 [exp]	4.2	0.8918
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10026046 [exp]	7.1	0.8800
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042905 [exp]	8.0	0.8930
					Lus10033601 [exp]	8.2	0.8803
AT3G59000			F-box/RNI-like superfamily pro...		Lus10034559 [exp]	8.2	0.8348
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10036009 [exp]	10.2	0.8705
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009662 [exp]	10.6	0.8396
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10028201 [exp]	12.4	0.8722
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Lus10011421 [exp]	13.2	0.8191

Compare expression of checked genes

Lus10011440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.