Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79870 94 / 6e-24 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 58 / 1e-10 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037552 [exp] 195 / 1e-62 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 108 / 6e-29 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 104 / 1e-27 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 91 / 3e-22 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 90 / 5e-22 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036536 [exp] 57 / 1e-10 AT2G45630 156 / 1e-48 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183700 [exp] 96 / 2e-24 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 92 / 6e-23 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.013G046150 [exp] 84 / 4e-21 AT1G79870 164 / 3e-50 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 63 / 2e-12 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 51 / 5e-08 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10011442 pacid=23182620 polypeptide=Lus10011442 locus=Lus10011442.g ID=Lus10011442.BGIv1.0 annot-version=v1.0 ATGGATTCCATCACCATCCTGATGACGAAACCAATCCTCCCATACCTGCAGCAAGAGCTCGACAGCCGATTCAACGTCCTCAAGCTCTGGGAAATACCAC CAACCACCACAACCGCTCAATTCCTCGAACAGCATAAGGAGGCGATCCACGCCGTGGTCGTCGACGGCGGCACGGGGCTGACTCAGGAGGTGATGACAGC GCTTCCAAAGACGGAGATCGTCGCCAGCTCCAGCGTCGGGATGAATAGGATTGATTTGGGGAAGTGTAAGGAGAAAGGGATTAGGGTCACCAACACTCTC GACGTTCTCACCGACGACGTCGCCGACCTGGCGATTGGGTTGATTCTTGCTGTGTTGAGGAATTGGCGGCTAGTGATCGGTGTGTTCGTAGTGGGCTGTG GATCAAAGGCGAGTTCAAGTTGGGCACCAAGGTATAGAATCCTTACATTTCAATAA
AA sequence Show only first row Show all	>Lus10011442 pacid=23182620 polypeptide=Lus10011442 locus=Lus10011442.g ID=Lus10011442.BGIv1.0 annot-version=v1.0 MDSITILMTKPILPYLQQELDSRFNVLKLWEIPPTTTTAQFLEQHKEAIHAVVVDGGTGLTQEVMTALPKTEIVASSSVGMNRIDLGKCKEKGIRVTNTL DVLTDDVADLAIGLILAVLRNWRLVIGVFVVGCGSKASSSWAPRYRILTFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10011442 [exp]	0	1
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10040938 [exp]	5.7	0.8436
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10032097 [exp]	6.0	0.8702
AT1G52320			unknown protein		Lus10035887 [exp]	6.9	0.8659
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Lus10018850 [exp]	8.4	0.8754
AT2G32190			unknown protein		Lus10010460 [exp]	12.2	0.8711
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10030496 [exp]	12.6	0.8533
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10003745 [exp]	17.0	0.8233
AT5G51680			hydroxyproline-rich glycoprote...		Lus10038900 [exp]	17.5	0.8707
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10007742 [exp]	21.0	0.8495
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10042608 [exp]	27.7	0.8701

Compare expression of checked genes

Lus10011442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.