Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42670 180 / 6e-55 Agenet domain-containing protein (.1) AT5G52070 170 / 1e-51 Agenet domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031429 [exp] 50 / 9e-07 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10010903 [exp] 45 / 3e-05 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G163500 [exp] 196 / 3e-60 AT5G52070 154 / 2e-44 Agenet domain-containing protein (.1) Potri.001G365800 [exp] 42 / 0.0004 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10011444 pacid=23182586 polypeptide=Lus10011444 locus=Lus10011444.g ID=Lus10011444.BGIv1.0 annot-version=v1.0 ATGGAAGTAGACGCCGATGATCTCCCCTTTGAAGTCGGCCAATTTGTCGAGATAAAATCTTTCATTGAGGGCTACCGGGGTGCATGGTTTTGTTGCAAGA TAAAGAGGAAAACAAAGAAACAGGGAATAGGGTATTACTTCGAATATCCTGAGTTTCCAGATGAAAAGGCTGAATGGACGAAGTTATATCAGAAGAATCC AAGTGACGGAAAGATGCATTTGATGGTGCGTCCTAGCTTTCCTCCTATCTTCCGGGAGAGTACTTTGCCCGATCTCGATACGATCTTAGATGTAACGGTT GTGGTGAATGAGACTTGGAAGGTAGGGGATTTAGTGGATTGGTGGTGTACTGGGTGCTATTGGTCTGGAAGGTTGAGCAAAGTATTAGGGCCTGGAAAAT TTAAGGTTGTTTTGCTGGAACCGCCTAATGGTGAAGGGGGATCTTATGATGCTTTGGTCAAAGATATGCGACCCGCTTTAGATTGGTCTCCGGCAGATGG GTGGTTGGTGCCTGCCCCGAAGGGAAGTAGAAACAGCCGTCCTTGTGCTCGGTTAATCAAACCTGTGATTTCAGCCGCGGTTCCTGCAGTCCCAGGAGGA AAAAAAGACGGCATTCAGAAAAACAAAGGAGCATCTATTGATGAAGCTGGTGCAAACCCGGAAAATGGCATGTCCAAGAGAATGAAGATTGATGACGCAT TCTCTTCTAACACGAAGGTTTCTGACACCGTGGAAGATGCAATCTTGGACTTGGAGGAACTTGTCAACCAAATTAACTGGATTAAGCGAATACTAGAGGT CGGGACACCATTGACAGGTCATGTTCAACCCTCGTGGCAATTTTTGGAACACGAGCCGCCGTCCAAGCCCAAATGA
AA sequence Show only first row Show all	>Lus10011444 pacid=23182586 polypeptide=Lus10011444 locus=Lus10011444.g ID=Lus10011444.BGIv1.0 annot-version=v1.0 MEVDADDLPFEVGQFVEIKSFIEGYRGAWFCCKIKRKTKKQGIGYYFEYPEFPDEKAEWTKLYQKNPSDGKMHLMVRPSFPPIFRESTLPDLDTILDVTV VVNETWKVGDLVDWWCTGCYWSGRLSKVLGPGKFKVVLLEPPNGEGGSYDALVKDMRPALDWSPADGWLVPAPKGSRNSRPCARLIKPVISAAVPAVPGG KKDGIQKNKGASIDEAGANPENGMSKRMKIDDAFSSNTKVSDTVEDAILDLEELVNQINWIKRILEVGTPLTGHVQPSWQFLEHEPPSKPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42670			Agenet domain-containing prote...		Lus10011444 [exp]	0	1
AT3G61540			alpha/beta-Hydrolases superfam...		Lus10010141 [exp]	4.8	0.8018
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10006587 [exp]	7.2	0.7735
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10037495 [exp]	7.7	0.7493
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	13.2	0.7657
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10026343 [exp]	19.2	0.7166
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Lus10018845 [exp]	23.7	0.7668
AT5G20610			unknown protein		Lus10021568 [exp]	30.2	0.6878
AT2G35360			ubiquitin family protein (.1)		Lus10000895 [exp]	31.2	0.7409
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10002850 [exp]	35.2	0.6737
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	40.7	0.7526

Compare expression of checked genes

Lus10011444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.