Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65210 449 / 2e-158 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G10030 443 / 6e-156 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G77920 343 / 2e-116 bZIP bZIP transcription factor family protein (.1) AT1G22070 339 / 9e-115 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G06950 288 / 1e-95 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 284 / 5e-94 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT1G68640 285 / 5e-93 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT5G06960 276 / 7e-91 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G08320 273 / 2e-89 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06839 268 / 1e-86 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037550 [exp] 733 / 0 AT5G65210 444 / 3e-155 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10035873 [exp] 628 / 0 AT5G65210 456 / 3e-161 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10025789 [exp] 564 / 0 AT5G65210 402 / 4e-140 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10042005 [exp] 359 / 9e-123 AT1G77920 428 / 5e-150 bZIP transcription factor family protein (.1) Lus10018009 [exp] 357 / 5e-122 AT1G77920 424 / 2e-148 bZIP transcription factor family protein (.1) Lus10009055 [exp] 352 / 5e-120 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1) Lus10031349 [exp] 339 / 4e-115 AT1G77920 429 / 1e-150 bZIP transcription factor family protein (.1) Lus10024140 [exp] 304 / 1e-101 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 302 / 5e-101 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085700 [exp] 505 / 2e-180 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G082000 [exp] 488 / 7e-174 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G170500 [exp] 385 / 3e-133 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 374 / 4e-129 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.007G079900 [exp] 312 / 2e-106 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) Potri.016G036500 [exp] 302 / 2e-99 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.001G029800 [exp] 300 / 3e-98 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 299 / 3e-98 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.003G194600 [exp] 298 / 2e-97 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 295 / 2e-96 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10011445 pacid=23182613 polypeptide=Lus10011445 locus=Lus10011445.g ID=Lus10011445.BGIv1.0 annot-version=v1.0 ATGAACTCCTCGCCTACTCAATTTGTGGCTTCAGGAGGAGGGATGGAGCTGTATGATCATGTGCACCAGCTTAGCATGTGGGGAGAAAATTTGTTCAAAA GTAACGGAAGTCCAAATGCATTGGCATCAATACTTATACCGAATACATCTCCATCCTTGTTCATATCCCCCGATATCAAGTTTGACAATCAGTCAGAAGA TACTTCACACGGCACTCCTGGAGTTCTTACTAATTATGAACAAGAAGTGACCAAGTCCAGTGAGAAGGTACAAAGACGTCTTGCCCAGAATCGAGAGGCT GCTCGTAAAAGCCGCATACGTAAAAAGGCATATGTGAAGCAATTAGAATCAAGTCGTTTGAAGTTGATTCAGTTGGAGCAAGAGCTTGACAAAGCCAGAC AACAGGGCTCATATATAGACAATGCAGTAGAAGGTAGTAATGTCGGGTTTAGCAGTGCCATGAACTCAGGGATTGCAATGTTTGAGACGGAGTATGTAAA TTGGTTGGAGGAACAGCAGAGACATGTTTGCGAACTGCGGACTGCTCTAAACTCCGATATAAGCGACGGAGAAATTCACGTACTTGTAGACGCTAGTTTG AACCACTATTACGAGCTTTTCCGCATGAAGGCAGCTGCTTCAAAGGCTGATGTTTTCTATGTCATGTATGGCTTGTGGAAGTCCTCAGCTGAAAGGTTTT TCCTCTGGATAGGAGGATTTCGTCCTTCCGAACTTATTAAGGTTTTAAGGCCTCAGATTGAGCCCTTGGCCGAGCCACAACTTCAGGATATCTGCAACTT GGGACAATTATGCCAGCAAGCAGAAGACGCCCTGTCACAAGGCATGGAGAGACTTCAGCAGACCCTTGCCCAGAGTGTCGCCGACGGTCAACTGGGTGAA GCAATTTACTCGCCCCAGATCGATACTGCCATGGAGAAGCTTGATTCTCTAGTGCGTTTCGTTCGCCAGGCGGATCATCTGCGAAAAGTAGCATTGGTGC AAGTATCTCAGATCCTGACACCGACACAGGCGGCTCGAGGATTGCTTGCTCTAGGAGAATACTTCGACAAACTAAGGGCTTTGAGTCAAGTTTGGGAAAC TAACGTCCGAGAGCCTTCGTAG
AA sequence Show only first row Show all	>Lus10011445 pacid=23182613 polypeptide=Lus10011445 locus=Lus10011445.g ID=Lus10011445.BGIv1.0 annot-version=v1.0 MNSSPTQFVASGGGMELYDHVHQLSMWGENLFKSNGSPNALASILIPNTSPSLFISPDIKFDNQSEDTSHGTPGVLTNYEQEVTKSSEKVQRRLAQNREA ARKSRIRKKAYVKQLESSRLKLIQLEQELDKARQQGSYIDNAVEGSNVGFSSAMNSGIAMFETEYVNWLEEQQRHVCELRTALNSDISDGEIHVLVDASL NHYYELFRMKAAASKADVFYVMYGLWKSSAERFFLWIGGFRPSELIKVLRPQIEPLAEPQLQDICNLGQLCQQAEDALSQGMERLQQTLAQSVADGQLGE AIYSPQIDTAMEKLDSLVRFVRQADHLRKVALVQVSQILTPTQAARGLLALGEYFDKLRALSQVWETNVREPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10011445 [exp]	0	1
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10039133 [exp]	2.4	0.9209
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10022675 [exp]	4.1	0.9059
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	5.8	0.9307
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10024916 [exp]	14.1	0.9104
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	16.7	0.9213
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10024941 [exp]	16.7	0.9144
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	17.8	0.9194
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10015921 [exp]	20.0	0.9114
AT1G34270			Exostosin family protein (.1)		Lus10033734 [exp]	21.1	0.8452
AT5G49960			unknown protein		Lus10035805 [exp]	25.1	0.9089

Compare expression of checked genes

Lus10011445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.