Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79890 1034 / 0 RAD3-like DNA-binding helicase protein (.1) AT1G79950 212 / 1e-56 RAD3-like DNA-binding helicase protein (.1) AT1G20720 211 / 2e-56 RAD3-like DNA-binding helicase protein (.1) AT1G20750 152 / 1e-37 RAD3-like DNA-binding helicase protein (.1) AT1G03190 117 / 1e-26 ATXPD, UVH6 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) AT1G09995 58 / 3e-10 DNA repair DEAD helicase RAD3/XP-D subfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037548 [exp] 1213 / 0 AT1G79890 645 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10016027 [exp] 219 / 1e-58 AT1G20720 955 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10012249 [exp] 197 / 1e-51 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10014662 [exp] 167 / 7e-43 AT1G03190 1402 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Lus10011460 [exp] 143 / 1e-34 AT1G79950 1049 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10037532 [exp] 141 / 5e-34 AT1G79950 1010 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10000652 [exp] 67 / 3e-11 AT1G03190 533 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G182600 [exp] 1227 / 0 AT1G79890 947 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.001G180200 [exp] 216 / 3e-58 AT1G79950 1042 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G008700 [exp] 211 / 2e-56 AT1G20720 1164 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G054000 [exp] 171 / 4e-44 AT1G03190 1410 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06733 [flax] [poplar] DEAD_2 DEAD_2
Representative CDS sequence Show only first row Show all	>Lus10011447 pacid=23182632 polypeptide=Lus10011447 locus=Lus10011447.g ID=Lus10011447.BGIv1.0 annot-version=v1.0 ATGGAGAAGATTGAAGAAGCAGAGATGAATTTCCCGGCGTTTCCTTATCAGCCGTACTCAATTCAGACTGATTTCATGAGGTCTCTCTATCGCTACTTGG ACCAGGGCGGCGTCTCCATGCTTGAAAGCCCCACCGGGACTGGGAAAACTCTGAGTATTATATGCTCAGCTGTGCAATGGGTGTTGGATCGGAGGGCGAA GGATAAACTAAAAACTGAAGTGGAGGTTCCGGATAGGAAGGATGCGGGATCGGATGATGAACCTGATTGGATGAGAAGTTTCGTCCCGAATAAGGATGCT GATTCCCCTGTGAAGAAGGAAGTGAGTAAGAAGAAATTCGGACTGGTCAAATGTGATAACAAGAGGAGGACTGACGAGAGTTCAAAGAACGTGAGGAAGG AAGAGAATGATAGTTTTCTGAGGGTATGTGATGATGGTGGCGAGTTTGACTTGAACGATTCTGAATTTCTGTTGGAAGATTACGAGAGTGAAGATGAAGG ATCTTTAAAGTCAAAGAGGAAAGCTGGTAGAGATGTTACTTTGTCAAGCGATGATGATGATGGAGATGATGATGAGGAGGAGGAAGAGGAGAAAGATTTC AAGATTTTCTTCTGTAGCAGGACGCATTCACAGCTTTCGCAGTTTGTAAAAGAGTTGAGGAAGACTGTGTTCACTGGTCGGATAAATGTTGTTTGTTTGG CATCTAGGAAGAATTTCTGCATTAATGAAGAGGTTTTGAAACTTGGAAACTCTGGTTGCATCAACGAACGATGCTTAGATCTTCAAAAGAAGAGGAAAGA TCAGGGTTCTAAGGTCAAGAACTTGGGAGAAAAAGGTAGAATCCGTCAGACAAAATCTTCTGGGGGATGCCCAATGCTTAGGAAGCAAAGCCTTCAAAGG CAATTCAGGGAAGAGATCTCTGAACAGGGAGCTTTAGACATTGAAGATCTTGTTCAGCTTGGAAGAAGTTTGGGAACATGTCCATATTATGGATCACGAA GCATGGTTCCAGTAGCTGATCTTGTGGTTCTCCCTTACCAGTCCGTGCTATCGAAATCGTCCCGAGACTCACTAGGTCTAAATTTGAAGAAGAGTATAGT GATAGTAGATGAGGCTCATAATCTAGCAGATTCCTTAATCAACATGTATGATGCAAAAGTTACTTCTTCGCAGTTGGAGCTTGTGTATTCTCACGTTGAA AAGTACTTCACGAGATTCCGCAATCTCTTAGGACCTGGCAATCGAAGATATATCCAAACTCTGATTGTTCTTACAAGAGCATTTTTGAGATCTTTATGTG GGGATCAAGATGCTGTCAACTCAAAGGACATCTTTCACACTTCTATAGCTATCAATGAGTTTTTATTCAAAGAAAATATCGATAACATTAACTTGGTTAA GCTGCTACAGTATGTAAAAGAGAGCAATCTAGTTTACAAGGTAAGTGGATATGGAGAAAAAGTCACCGCCTTGCATAGTGAAACCAGTGATTTCCTTAAG GATGGAAGCATTCTTTCCAGTTTCAGTGCACTAGTGGACATGTTGGTGTCACTAACAAATAACAATGGTGATGGCCGGATAATAATTTCGAATGTCCGAT CAACATCCGATAAACCGCAAGGAGGAGTCTTGAAATATGTAATGCTCACAGGCGAAAAGATTTTCTCAGAGATTGTTGACGAGGCTCATGCGGTTATACT GGCCGGAGGAACCCTACAACCGATTGAAGAAACGAGGGAAAGACTCTTCCCACGGCTACCACTAGATCAGCTGCATTTCTTTTCATGTGGCCATATTGTC CCTCCTCAAAGTATTCTACCTATTGCAGTTTCAAAGGGTCCTTCAGGTCAAGCTTTTGATTTTAGTTACAGCTCAAGAAGCTCATTAGCCACGATAAACG AGCTTGGACTCTTGCTCTGCAACTTGGTCACAGTCGTTCCTGAAGGAATCGTTGTGTTCTTTTCATCCTTCGAGTATGAAGAACAAGTACACAGTGCATG GAAGACATCAGGTATCCTCGAAAGGATGTCGAAACGAAAACGCATTTTCAGAGAACCGAGGAAGAATTCTGAAGTAGAACTAGTTCTGAACCAATACAAG GACACCATTTTGAAGTTATCTAAAGATGCAGGAGCTTACAATGGGGCAATGCTTCTGGCTGTAGTTGGTGGCAAAGTATCTGAAGGCATCAACTTTAGCG ACGGGATGGGTCGATGCGTTGTTATGGTTGGATTACCGTATCCAAGTCCATCCGATATTGATTTAATGGAGAGGGTGAAGTACATTGAAAGCTTAGGAGA CCAAAATCGTGCCAAGGTTTGTAATTGGGAAGATGAACATTATACAGGAAAGGCATCCTTCAGCATATTGAGAAGTTGCAGGGGCAGAGGGAAAGAGTAC TATGAAAACCTCTGCATGAAAGCTGTAAATCAATCTATCGGTAGAGTGATTCGCCATGTGAATGACTATGCAGCAGTATTGTTGGTGGACAGGCGTTATG GTGCATCATCAGACTCTTTGAAAAGAAGTGCTTCTCACCCAACAAACAAGCTTCCCAATTGGATCAAAGATCGCCTTGTTTCTGCAACAAGCAACTATGG AGAAGTTCATAGGTTGCTACACCAATTCTTCAAATTCAACAAGAGTAGAGGGCCTCAGTAA
AA sequence Show only first row Show all	>Lus10011447 pacid=23182632 polypeptide=Lus10011447 locus=Lus10011447.g ID=Lus10011447.BGIv1.0 annot-version=v1.0 MEKIEEAEMNFPAFPYQPYSIQTDFMRSLYRYLDQGGVSMLESPTGTGKTLSIICSAVQWVLDRRAKDKLKTEVEVPDRKDAGSDDEPDWMRSFVPNKDA DSPVKKEVSKKKFGLVKCDNKRRTDESSKNVRKEENDSFLRVCDDGGEFDLNDSEFLLEDYESEDEGSLKSKRKAGRDVTLSSDDDDGDDDEEEEEEKDF KIFFCSRTHSQLSQFVKELRKTVFTGRINVVCLASRKNFCINEEVLKLGNSGCINERCLDLQKKRKDQGSKVKNLGEKGRIRQTKSSGGCPMLRKQSLQR QFREEISEQGALDIEDLVQLGRSLGTCPYYGSRSMVPVADLVVLPYQSVLSKSSRDSLGLNLKKSIVIVDEAHNLADSLINMYDAKVTSSQLELVYSHVE KYFTRFRNLLGPGNRRYIQTLIVLTRAFLRSLCGDQDAVNSKDIFHTSIAINEFLFKENIDNINLVKLLQYVKESNLVYKVSGYGEKVTALHSETSDFLK DGSILSSFSALVDMLVSLTNNNGDGRIIISNVRSTSDKPQGGVLKYVMLTGEKIFSEIVDEAHAVILAGGTLQPIEETRERLFPRLPLDQLHFFSCGHIV PPQSILPIAVSKGPSGQAFDFSYSSRSSLATINELGLLLCNLVTVVPEGIVVFFSSFEYEEQVHSAWKTSGILERMSKRKRIFREPRKNSEVELVLNQYK DTILKLSKDAGAYNGAMLLAVVGGKVSEGINFSDGMGRCVVMVGLPYPSPSDIDLMERVKYIESLGDQNRAKVCNWEDEHYTGKASFSILRSCRGRGKEY YENLCMKAVNQSIGRVIRHVNDYAAVLLVDRRYGASSDSLKRSASHPTNKLPNWIKDRLVSATSNYGEVHRLLHQFFKFNKSRGPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	0	1
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	3.0	0.9652
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10004012 [exp]	3.9	0.9541
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	4.0	0.9543
AT2G37960			unknown protein		Lus10035544 [exp]	4.2	0.9302
AT4G16807			unknown protein		Lus10010995 [exp]	4.6	0.9274
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	7.3	0.9464
AT4G18425			Protein of unknown function (D...		Lus10013975 [exp]	9.4	0.9103
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	10.2	0.9485
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	10.6	0.9486
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027848 [exp]	10.8	0.9386

Compare expression of checked genes

Lus10011447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.