Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15260 76 / 8e-17 unknown protein AT3G16070 71 / 5e-15 unknown protein AT3G24535 47 / 3e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037547 [exp] 337 / 8e-118 AT1G15260 88 / 2e-21 unknown protein Lus10035880 [exp] 149 / 2e-44 AT1G15260 94 / 4e-24 unknown protein Lus10025783 [exp] 100 / 3e-25 AT1G15260 97 / 3e-25 unknown protein Lus10023639 [exp] 84 / 7e-20 AT3G24535 72 / 4e-16 unknown protein Lus10034910 [exp] 83 / 3e-19 AT3G16070 72 / 3e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G182500 [exp] 130 / 2e-37 AT3G16070 97 / 2e-25 unknown protein Potri.003G053600 [exp] 99 / 3e-25 AT1G15260 100 / 1e-26 unknown protein Potri.018G080001 [exp] 96 / 1e-23 AT1G15260 52 / 3e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011448 pacid=23182606 polypeptide=Lus10011448 locus=Lus10011448.g ID=Lus10011448.BGIv1.0 annot-version=v1.0 ATGCAGCTGAGAGAGTCCATTGAAAAGACCAAAATCTTCTTCCAAGAAACTCTACAAGACCTCAAATCCCTTTTCCACCAAAACATCCCCAAGAAACCCA CCACTCTAATCACTAACCCTTTCTCTTATTGGAAGAGCAACTGCGAGAACCCAGATCACACCATTGCTGATCATGAGTACTACACCACCTTCTGCAATGA ACTCGAGTCTGATCTCCAAAAAGTCACGAAGCTCAACCCCACCGCTACCGCCACTACCTCCACCACAGTCGGGTCCTGGGGGAGGTTGCCTCGTGCTCAG GGCAAGTCTTCATTCAGGACCAGAACAACAAATTTAGGTCCAGTGTCACTTTCAGTCCAAGATCCGTCCCCGACCACCACCACCACCACTAGCAAAGTGC CAGCTGTCCCAAAAGAGTCAGCACCAAACAGAGAATTAGCTGATCAAATGAAGAACATGAAGAGGAACAAGAAGAAAAACCAGAAGAAGAACAGTAACAG AACTGGTAATGATCAAGTGAGCTATTATGTGTTGGCCAGGAAGATCAAAGAACTGGAGATGATGGATGTGAGTGACGTGGAGCATGTTCTTGATGTTGAA GAAGCTCTCCATTACTATTCCAGACTGAAGAGCCCCGCTTATCTCGACATTGTCAACAAGTTCTTCACCGATATGTACCACGAGATCTCTTTCATCCCTC CTCCAAGTTATTCCCAGGCTTCTGTTTCTGCCAACAGCTCAAGAAGGAGGCTTTCTTCTTTCAGATTGTGA
AA sequence Show only first row Show all	>Lus10011448 pacid=23182606 polypeptide=Lus10011448 locus=Lus10011448.g ID=Lus10011448.BGIv1.0 annot-version=v1.0 MQLRESIEKTKIFFQETLQDLKSLFHQNIPKKPTTLITNPFSYWKSNCENPDHTIADHEYYTTFCNELESDLQKVTKLNPTATATTSTTVGSWGRLPRAQ GKSSFRTRTTNLGPVSLSVQDPSPTTTTTTSKVPAVPKESAPNRELADQMKNMKRNKKKNQKKNSNRTGNDQVSYYVLARKIKELEMMDVSDVEHVLDVE EALHYYSRLKSPAYLDIVNKFFTDMYHEISFIPPPSYSQASVSANSSRRRLSSFRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15260			unknown protein		Lus10011448 [exp]	0	1
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10019407 [exp]	1.4	0.9658
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10032210 [exp]	2.0	0.9711
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017600 [exp]	2.8	0.9596
					Lus10014719 [exp]	6.0	0.9652
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	6.9	0.9462
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10017856 [exp]	7.1	0.9489
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10033561 [exp]	8.1	0.9340
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	9.5	0.9577
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	9.9	0.9560
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	10.4	0.9570

Compare expression of checked genes

Lus10011448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.