Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16060 918 / 0 ATP binding microtubule motor family protein (.1) AT3G16630 605 / 0 ATKINESIN-13A, KINESIN-13A P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G18550 192 / 1e-51 ATP binding microtubule motor family protein (.1) AT3G49650 184 / 1e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 175 / 2e-45 ATP binding microtubule motor family protein (.1) AT5G60930 174 / 6e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G28620 172 / 2e-44 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 167 / 7e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G47820 167 / 1e-42 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G27550 163 / 7e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037546 [exp] 1291 / 0 AT3G16060 994 / 0.0 ATP binding microtubule motor family protein (.1) Lus10002876 [exp] 551 / 0 AT3G16630 1127 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10023103 [exp] 550 / 0 AT3G16630 1121 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019245 [exp] 200 / 9e-55 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 199 / 1e-53 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025304 [exp] 172 / 2e-44 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10024429 [exp] 172 / 3e-44 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10000392 [exp] 172 / 5e-44 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009073 [exp] 170 / 2e-43 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053800 [exp] 1018 / 0 AT3G16060 1010 / 0.0 ATP binding microtubule motor family protein (.1) Potri.001G182300 [exp] 1012 / 0 AT3G16060 990 / 0.0 ATP binding microtubule motor family protein (.1) Potri.018G079800 [exp] 723 / 0 AT3G16060 755 / 0.0 ATP binding microtubule motor family protein (.1) Potri.008G221400 [exp] 558 / 0 AT3G16630 1167 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G013500 [exp] 552 / 0 AT3G16630 1141 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G223000 [exp] 366 / 4e-119 AT3G16630 574 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G058400 [exp] 192 / 2e-51 AT1G18550 872 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G082400 [exp] 175 / 3e-45 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 172 / 2e-44 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 171 / 4e-44 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10011449 pacid=23182614 polypeptide=Lus10011449 locus=Lus10011449.g ID=Lus10011449.BGIv1.0 annot-version=v1.0 ATGGGACGGCAGGGACAGAGATCTGGAGCTGCTGCGACGGTGCACCATCAGAGACAGTACTCTGATCACTTCGTGGATTCTTCCTCCACCAATTCATCAT CCAATGGCCGGTGGCTTCAGTCTACTGGTCTCCAGCACCTCCACAACTTCTCCTCCTCTACTACTTCGTCTTCCTCCATTCCTGCTCTTCAGCTCTTAGT CGTTGACTTGCGCTCACGTAATGTGAAGCAGGATTACAATTTCTATGGCGGCGGCGGCGGCGGCGGCGGAGGAGGACTAGGGCAGGGGACGAGGATGTAC AGAAATGCACAGAGGGGATTTAATGGGCAAGATGAGTTCTATACAGAGCCGTCGACGCCTCCAGTCGGTTCAAGGCATACGACTCAGATGAAGAGCCGGG AAGATTCTCCAACTGAGTTCAGTCCTGGGCTATTGGATCTTCACTCATTTGACACCGAGTTGCTTCCTGAGTTGCCTGTTCCTAGCATGTATGATGGATC TTCTCTGTTTCGCCCTGGTCGAGGAAGAAGCTTTGATGACTCCGAGCCATACTTTTCAAGCAAGCAAGCTGCTCGAGCTTTCCAGGTTGCACTCTCATTT AAATCATTTATGCTTAATCTCTCATCTCCTTGTAAGCAAGATTCTAGAGTTTCTATTTCGGACACTGAGATAATCTCAATACAGGTTCGTAAGAGACCAT TGAACAAGAAGGAGCTTGCAAAAAATGAAGAGGATATAATTGACACGAATTGCAATTCCCTAACGGTTCACGAGACTAAACTTAAGGTTGACCTAACGGA ATATGTTGAGAAGCATGACTTTGTCTTTGATGCAGTACTAAATGAGGAGGTCTCAAATGATGAGGTGTATCATGAGACAGTGGAACCGATAGTCCCAATA ATTTTTCAACGCACTAAAGCTACTTGCTTTGCATATGGTCAAACAGGAAGTGGAAAAACCTATACGATGAAGCCACTTCCTCTCAGAGCATCACGAGATA TCTTGAGGTTAATGCAACATACTTACAGAAACCAAGGGTTTCAGCTGTTTGTCAGTTTCTTTGAAATATATGGTGGGAAGTTATTCGATCTCCTCGGTGA AAGGAAGAAATTGTGCATGAGGGAAGATGGTAAGCAGCAAGTCTGTATTGTCGGTCTGCAGGAGTACAGAGTTTCAGATGTAGAGGCAATAAAAGAACTT ATCGAGAAAGGCAGTTCCACAAGAAGAACTGGCACAACAGGTGCAAATGAGGAATCCTCTCGTTCACATGCCATATTACAGCTTGCTATCAAGAAGTCAG TTGAAGGAAATGAAACAAAGCCTCCACGTCTGGTTGGCAAGCTTTCCTTTATAGATCTGGCTGGAAGTGAACGAGGTGCAGATACTACAGATAATGATAA ACAGACTAGGATGGAGGGTGCAGAGATCAACAAGAGTTTGCTTGCATTAAAAGAGTGTATAAGGGCTCTTGACAATGACAAGAGTCATATTCCTTTTAGA GGCAGCAAGTTAACCGAGGTTCTAAGAGACTCCTTCGTCGGGAATTCTCGCACTGTAATGATATCATGCATTTCCCCAAGCTCAGGATCATGCGAGCATA CCCTGAACACATTGAGATATGCTGACAGAGTGAAGAGTCTTTCCAAAGGAAACAACGCATCCAAGAAAGACGTCATGTCTTCAACCATAAACTTGAAAGA GTCTACTGCCGTGCCCTTGTCATCGATCTTACCAGCTGGATCATCTCCGGACGATGATGTAACTGATGGATGGGCCGATCAAGATGAAGGAGACGATTTC GAGGAGTTGGAGGATTATGAACAAGAGAAACCGATGCGGAGAGAGAATGGAAAGCTTGAAGCATACAATCCACCAGTCTTGGAGGACAAGTTTCGGAAAT CCATTGTCCAGACAAAATTCAAGGAATTACCTAAAGCTAGTATGAAGAAGTCGGATTCAGACGACGATTTAAGCTCCCTACTACAGGAGGAGGAAGATCT CGTAGGTGCCCACAGGAAGCTGGTGGAGGAGACCATGAATATTGTTAGAGAGGAGATGAACCTGTTGGTGGAAGCAGACCAACCAGGGAACCAGCTAGAC GATTACGTTACACGGTTGAACGCGATCCTTTCCCAGAAGGCTGCCGGTATACTGCAGCTACAGAATCGGCTGGCGCATTTCCAGAAGCGGCTTAGGGATC ACAATGTGTTGGTCTCATCCTCCGGCTATTAA
AA sequence Show only first row Show all	>Lus10011449 pacid=23182614 polypeptide=Lus10011449 locus=Lus10011449.g ID=Lus10011449.BGIv1.0 annot-version=v1.0 MGRQGQRSGAAATVHHQRQYSDHFVDSSSTNSSSNGRWLQSTGLQHLHNFSSSTTSSSSIPALQLLVVDLRSRNVKQDYNFYGGGGGGGGGGLGQGTRMY RNAQRGFNGQDEFYTEPSTPPVGSRHTTQMKSREDSPTEFSPGLLDLHSFDTELLPELPVPSMYDGSSLFRPGRGRSFDDSEPYFSSKQAARAFQVALSF KSFMLNLSSPCKQDSRVSISDTEIISIQVRKRPLNKKELAKNEEDIIDTNCNSLTVHETKLKVDLTEYVEKHDFVFDAVLNEEVSNDEVYHETVEPIVPI IFQRTKATCFAYGQTGSGKTYTMKPLPLRASRDILRLMQHTYRNQGFQLFVSFFEIYGGKLFDLLGERKKLCMREDGKQQVCIVGLQEYRVSDVEAIKEL IEKGSSTRRTGTTGANEESSRSHAILQLAIKKSVEGNETKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDKSHIPFR GSKLTEVLRDSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNNASKKDVMSSTINLKESTAVPLSSILPAGSSPDDDVTDGWADQDEGDDF EELEDYEQEKPMRRENGKLEAYNPPVLEDKFRKSIVQTKFKELPKASMKKSDSDDDLSSLLQEEEDLVGAHRKLVEETMNIVREEMNLLVEADQPGNQLD DYVTRLNAILSQKAAGILQLQNRLAHFQKRLRDHNVLVSSSGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16060			ATP binding microtubule motor ...		Lus10011449 [exp]	0	1
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	2.2	0.9159
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10013342 [exp]	3.5	0.9131
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	3.5	0.9120
AT5G66420			unknown protein		Lus10025992 [exp]	6.5	0.8794
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	7.3	0.8975
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	8.9	0.8806
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	9.4	0.8791
AT1G72410			COP1-interacting protein-relat...		Lus10008140 [exp]	10.2	0.9020
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010780 [exp]	10.4	0.8678
AT4G23460			Adaptin family protein (.1)		Lus10024654 [exp]	10.6	0.8969

Compare expression of checked genes

Lus10011449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.