Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16050 372 / 6e-131 A37, ATPDX1.2 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) AT5G01410 337 / 5e-117 PDX1, ATPDX1.3, RSR4 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) AT2G38230 318 / 1e-109 ATPDX1.1 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.1, pyridoxine biosynthesis 1.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037545 [exp] 479 / 3e-174 AT3G16050 370 / 5e-130 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) Lus10038318 [exp] 336 / 1e-116 AT5G01410 578 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10004812 [exp] 334 / 8e-116 AT5G01410 592 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10036181 [exp] 330 / 2e-114 AT5G01410 566 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10002486 [exp] 279 / 8e-96 AT5G01410 395 / 1e-140 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G182100 [exp] 395 / 3e-140 AT3G16050 483 / 9e-174 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) Potri.016G116400 [exp] 343 / 2e-119 AT5G01410 532 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Potri.006G100500 [exp] 338 / 1e-117 AT5G01410 538 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01680 [flax] [poplar] SOR_SNZ SOR/SNZ family
Representative CDS sequence Show only first row Show all	>Lus10011450 pacid=23182621 polypeptide=Lus10011450 locus=Lus10011450.g ID=Lus10011450.BGIv1.0 annot-version=v1.0 ATGAACTCGGAGCCGACAAGTGGGAGAGGCGGGATTCACCGGATGCCCGATCCATCTCTGGTGAAGGAGATCAAGCGCTCGGTTTCAATCCCTGTCCTAG CTCGAGTCCGCGTCGGACATTTCGTTGAAGCTCAGATACTGGAAGCAATCGACGTCGATTACATCGACGAGAGCGAAGTTCTTGCTCCGGCTGACGAGGA TCACTTCATCAACAAGCATAACTTCGGAGTGCCGTTCGTCTGCGGCTGCAGCGGTTTAGGAGAAGCGTTGCGGAGGGTGAGGGAAGGAGCGGCAATGATC AGAGCACAAGGGGAGACGGTGGAAGCGACTGGAAACATAGCTCAGACGGTGAGGAATGTGAGGAGCGTGATGGGAGACATCAGGATCTTGAACAACATGG ATGAAGACGAAGTGTTTGCGTTTGCTAAGAAGATCGCTGCTCCGTATGATCTGGTGGCCCAGACGAAGCAGATGGGGAGGCTGCCTGTTGTGTTGTTTGC TGGTGGTGGGATCGTGACGCCTGCTGATGCTGCTCTGATGATGCAGCTGGGGTGTGACGGTGTTTTTGTTGGGAATGAGGTCTTTGATTGTGATGACCCT TACAAGCGAGTTAGAGGAATAATGCAGGCGGTTAGGCATTACAATGATCCCCATGTCTTGGTGGAGAGTAGCAGCTCTGGACTTGAGGATGTAATGGCTC AACTCAATCTCAGTGAAGCCAGGATCGAGCAGTGA
AA sequence Show only first row Show all	>Lus10011450 pacid=23182621 polypeptide=Lus10011450 locus=Lus10011450.g ID=Lus10011450.BGIv1.0 annot-version=v1.0 MNSEPTSGRGGIHRMPDPSLVKEIKRSVSIPVLARVRVGHFVEAQILEAIDVDYIDESEVLAPADEDHFINKHNFGVPFVCGCSGLGEALRRVREGAAMI RAQGETVEATGNIAQTVRNVRSVMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQMGRLPVVLFAGGGIVTPADAALMMQLGCDGVFVGNEVFDCDDP YKRVRGIMQAVRHYNDPHVLVESSSSGLEDVMAQLNLSEARIEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10011450 [exp]	0	1
AT3G12050			Aha1 domain-containing protein...		Lus10017240 [exp]	1.0	0.9629
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031877 [exp]	2.4	0.9309
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10039841 [exp]	2.4	0.9380
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	2.6	0.9176
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10018605 [exp]	4.2	0.9234
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10005953 [exp]	6.3	0.9253
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025333 [exp]	7.7	0.9052
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10039785 [exp]	8.2	0.8496
AT1G23040			hydroxyproline-rich glycoprote...		Lus10043475 [exp]	9.2	0.9012
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	9.4	0.9135

Compare expression of checked genes

Lus10011450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.