Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037542 [exp] 344 / 3e-120 ND / Lus10037541 [exp] 133 / 2e-37 AT3G14300 41 / 4e-04 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10002237 [exp] 98 / 4e-24 ND / Lus10011453 [exp] 82 / 3e-18 ND 36 / 0.008 Lus10037540 [exp] 83 / 4e-18 ND 40 / 7e-04 Lus10025782 [exp] 84 / 6e-18 ND / Lus10025781 [exp] 74 / 4e-15 ND / Lus10038294 [exp] 73 / 2e-14 ND 42 / 4e-04 Lus10025807 [exp] 72 / 5e-14 ND 39 / 0.002
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011452 pacid=23182578 polypeptide=Lus10011452 locus=Lus10011452.g ID=Lus10011452.BGIv1.0 annot-version=v1.0 ATGGAATTGTCTTCGGTGGCAGCTCGCTTGGACAGCACCTCGGCAGCTACAGCGCCGACGATGGCGCAGTTACCACCTCAGCTGATGTGGAATATAAACG TGGATGCATGTGTTCGGAAAACTTCACCGTCGCAGGGTTACGGAGCATTAGGGGTTGTGATACGGTCTCGGCCACAGGACAGCTACTTCTCGTCTTCAAG ACTTCGGATTCAACGGAGACAGTGCGATTGGTCAATTCCTGGATGCAGGATATATCCGCGCCGGGCTATTATTTCCCGAATGCCACCGTCTCCTTCAGTC ACTTCCTTGTGTTACTATCGCTCATGTAACACGTTTGGATTAGTGACACCTCAAAACATAGCCCCATCAACCTCTCCAGCTCCGTCAACCTCGTCGCCAT CGATACCTAATTACACGTACGACACACTCGCGGACCTGATGTGTGCACATTACGACCCAAAGGCGACGATGGAGTCCGTGAACAACGACCCTGCCATCAA GGACATATGCGACACGACCGAGAAGCCAGCCGAATGCCTCGACTTCCTCGGGAACTCCCCCAAGGCCAACCCCGTGTTCGCCATCGGGGCCGACGTGGAC ACCCTGAAGACGTTCCTCACCGAAGCCTCCCAGGGCGCCTCGGGGACCCCGCCCGCGGACGTTAAGGAGAGCTTCGACACGTGCGTCCGTAACTACAACG AGGTGGCCAACAAGCTGGCCGAGGTCGTGGCGTCCTGCGCCGTGTGCACGCAGCGGAACGGCAAGTGCCCGCCGCAGGAGGCCACCAAGATCACCACCGC GCTGAACGATTCGCTGGCCGGGCTTGGGCTGTGCGGCAAGGCGTTGGATGCTACGACGGCGAAGTGTAAGAGGTGGCTGGTGAATATTAACGTTGGCGCG ACGGAGAGCGTCACGAAAATCCTTGAAGTTGCCAAGAAACTGACCTAA
AA sequence Show only first row Show all	>Lus10011452 pacid=23182578 polypeptide=Lus10011452 locus=Lus10011452.g ID=Lus10011452.BGIv1.0 annot-version=v1.0 MELSSVAARLDSTSAATAPTMAQLPPQLMWNINVDACVRKTSPSQGYGALGVVIRSRPQDSYFSSSRLRIQRRQCDWSIPGCRIYPRRAIISRMPPSPSV TSLCYYRSCNTFGLVTPQNIAPSTSPAPSTSSPSIPNYTYDTLADLMCAHYDPKATMESVNNDPAIKDICDTTEKPAECLDFLGNSPKANPVFAIGADVD TLKTFLTEASQGASGTPPADVKESFDTCVRNYNEVANKLAEVVASCAVCTQRNGKCPPQEATKITTALNDSLAGLGLCGKALDATTAKCKRWLVNINVGA TESVTKILEVAKKLT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011452 [exp]	0	1
					Lus10018224 [exp]	1.0	0.9826
					Lus10004849 [exp]	1.4	0.9813
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10007246 [exp]	3.0	0.9430
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009003 [exp]	4.0	0.9316
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10002691 [exp]	6.0	0.9147
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	6.3	0.9205
					Lus10020978 [exp]	7.3	0.9025
					Lus10007554 [exp]	7.9	0.9146
AT1G75800			Pathogenesis-related thaumatin...		Lus10023897 [exp]	9.4	0.8872
					Lus10021894 [exp]	10.0	0.9006

Compare expression of checked genes

Lus10011452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.