Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037540 [exp] 395 / 7e-142 ND 40 / 7e-04 Lus10002237 [exp] 114 / 2e-31 ND / Lus10037541 [exp] 100 / 7e-26 AT3G14300 41 / 4e-04 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10037542 [exp] 86 / 2e-20 ND / Lus10011452 [exp] 82 / 2e-18 ND / Lus10025781 [exp] 65 / 9e-13 ND / Lus10025782 [exp] 57 / 1e-09 ND / Lus10025807 [exp] 57 / 2e-09 ND 39 / 0.002 Lus10038294 [exp] 57 / 2e-09 ND 42 / 4e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10011453 pacid=23182608 polypeptide=Lus10011453 locus=Lus10011453.g ID=Lus10011453.BGIv1.0 annot-version=v1.0 ATGGATCGAAGCATTCTGATCGTCGCAATGATCGTGGCATTGTCCCTGGTCTCCCCGGCCAGATCGGCCGAGGAAGCCGCGAAACCAGCCACCCACACCA AAGTCGTGTTCAAGAACCTCGTATCCCTAATGTGCGTGAAGCGCGACAAAACGGCGACCATGGAATCGGTCAAGGCGAACTCTGAGATCAACAGCCTGTG CCAGGGCAAGGACAACCCGACCAAGTGCCTCGAGTTCATGGGGAACGCCCCCAACGCGGACCCCGCGTACGCCGTCAAGACCGACGCCAGTGTCATTAGG AGCGTTATCCGCGAGGGATCCTTCCTCGTCTCGAGGAGTGTCCCCGGGCTGGAGAAGAGCTTCAAGACTTGCTCCACGGACTTCGAGAAGGCCGTGAAAA TGCTCGACGAAGCTGCCGCGGCTACCGGGTCCCATAACGGTACCGAGGTGGCCACGTTGCTCCGCCACGCCTCGACCTACCTCAGGCTGTGCGACAAGTC GTTCCATGGCACCCCTGACATCAAGAAGAAGTATACCGTGAAGGACCTCGCTGAGCAGGCGCGTGATGCTACCGACAAAGTGCTGTTGATTGCGTTGTGG ATTAAGTAA
AA sequence Show only first row Show all	>Lus10011453 pacid=23182608 polypeptide=Lus10011453 locus=Lus10011453.g ID=Lus10011453.BGIv1.0 annot-version=v1.0 MDRSILIVAMIVALSLVSPARSAEEAAKPATHTKVVFKNLVSLMCVKRDKTATMESVKANSEINSLCQGKDNPTKCLEFMGNAPNADPAYAVKTDASVIR SVIREGSFLVSRSVPGLEKSFKTCSTDFEKAVKMLDEAAAATGSHNGTEVATLLRHASTYLRLCDKSFHGTPDIKKKYTVKDLAEQARDATDKVLLIALW IK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011453 [exp]	0	1
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10041782 [exp]	5.3	0.9283
AT2G40390			unknown protein		Lus10009844 [exp]	9.1	0.9173
AT1G13810			Restriction endonuclease, type...		Lus10012108 [exp]	11.2	0.8570
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10011632 [exp]	14.8	0.6885
					Lus10043138 [exp]	14.9	0.7986
					Lus10011249 [exp]	15.2	0.8601
					Lus10018225 [exp]	15.2	0.9156
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10029358 [exp]	15.9	0.9132
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10033595 [exp]	16.3	0.7729
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10005108 [exp]	17.7	0.7439

Compare expression of checked genes

Lus10011453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.