Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21390 1989 / 0 Coatomer, alpha subunit (.1) AT1G62020 1986 / 0 Coatomer, alpha subunit (.1) AT3G15980 262 / 5e-73 Coatomer, beta' subunit (.1.2.3.4.5) AT1G52360 256 / 1e-70 Coatomer, beta' subunit (.1.2) AT1G79990 249 / 1e-68 structural molecules (.1.2.3.4.5) AT3G49660 123 / 2e-30 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 116 / 6e-26 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 106 / 5e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 103 / 3e-22 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 99 / 4e-22 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040752 [exp] 2097 / 0 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 2094 / 0 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10025780 [exp] 1556 / 0 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10037538 [exp] 1528 / 0 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10035883 [exp] 1329 / 0 AT1G62020 1288 / 0.0 Coatomer, alpha subunit (.1) Lus10037539 [exp] 672 / 0 AT1G62020 594 / 0.0 Coatomer, alpha subunit (.1) Lus10033092 [exp] 258 / 2e-71 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10026094 [exp] 171 / 5e-47 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10002324 [exp] 167 / 3e-45 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069700 [exp] 2068 / 0 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 2064 / 0 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.003G056300 [exp] 258 / 1e-71 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 258 / 2e-71 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.006G250200 [exp] 180 / 3e-49 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.005G148500 [exp] 114 / 2e-27 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 114 / 2e-27 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 108 / 2e-25 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 105 / 3e-23 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.008G002300 [exp] 105 / 1e-22 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF06957 [flax] [poplar] COPI_C Coatomer (COPI) alpha subunit C-terminus CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] Beta_propeller PF04053 [flax] [poplar] Coatomer_WDAD Coatomer WD associated region
Representative CDS sequence Show only first row Show all	>Lus10011454 pacid=23182653 polypeptide=Lus10011454 locus=Lus10011454.g ID=Lus10011454.BGIv1.0 annot-version=v1.0 ATGTTGACGAAGTTTGAGACGAAGAGTAGTAGAGTGAAGGGGCTGAGTCTTCACAGTAAGAGGCCATGGATCCTAGCGAGTCTTCACAGCGGTGTGATCC AGCTGTGGGACTACCGTATGGGGACTCTCATTGATCGATTCGACGAGCATGATGGTCCAGTTAGAGGTGTTCATTTCCACAAATCTCAACCTCTCTTTGT CTCCGGAGGTGATGATTACAAGATTAAGGTTTGGAACTACAAGTTACATAGGTGCCTCTTTACCCTTCTGGGACACCTTGATTACATCCGTACAGTGCAG TTTCATCACGAGTACCCATGGATTGTGAGTGCCAGTGATGATCAGACAATCCGGATTTGGAACTGGCAGTCACGTGCTTGCATTTCTGTTCTGACAGGCC ACAATCATTATGTTATGTGTGCCTCATTCCATCCTAAAGAAGATCTTGTTGTATCAGCTTCTCTGGACCAGACTGTCCGAGTTTGGGACACTTCTGCATT GAAAAAGAAAACTGCATCTCCTTCTGATGATATAATGGGGTTGAGTCAGTTGAATGGAGATCTTTTTGGTGGTATTGATGCTGTTGTTAAGTATGTATTG GAAGGTCATGACCGTGGAGTAAATTGGGCTTCTTTCCACCCTACACTTCCTTTGATCGTCTCCGGAGCTGATGATCGTCAAGTCAAGTTGTGGCGGATGA ATGATACAAAGGCTTGGGAAGTGGACACTTTGAGAGGACACATGAATAATGTTTCTAGTGTTATGTTCCATGCTAAGCAAGATATAATTGTGTCCAATTC AGAGGATAAGAGTATTAGAGTTTGGGATTTAACTAAGAGAACTGGGCTTCAAACTTTCCGTCGTGAGCAGGACCGCTTTTGGATCCTTGCAGCTCATCCT GAGATGAACCTTCTTGCTGCTGGTCATGACACTGGGATGATTGTGTTTAAGTTGGAGAGAGAGAGGCCTGCATTTGCTGTAAGCGGAGACTCTCTCTTTT ACACGAAGGATAGGTTTTTGCGGTTTTTTGAGTATTCTAGTCAGAAGGAAAATCAGGTGATTCCCATCAGGCGTCCTGGTAGTGCTAGCTTGAATCAGAG TCCAAGAACTCTTTCTTACAGCCCTACTGAAAATGCAGTTCTGTTGTGTTCGGACATAGATGGCGGCTCTTATGAACTGTATATAATACAAAAGGATAGT GTTTTGAGGGGTGATTCTGTACAGGATGCAAAGAGAGGAGCAGGTGCTTCGGCAGTCTTCATTGCTCGAAACAGGTTTGCTGTGCTTGACAAAAGTAGCA ATCAAGTATTGGTCAAGAACCTAAAGAATGAGGTTGTCAAAAAAAGTGCTCTTCCCATTGCTACAGATGCAATTTATTATGCTGGGACTGGTAGTCTGCT TTGTAGAGCTGAGGGTAGAGTGGTCATATTCGATCTTCAGCAGAGACTTGTTATTGGGGATCTTCCAGCATCTGTTGTGAAGTATGTCGTTTGGTCTAAT GACATGGAATCTGTTGCCTTATTGAGCAAGCATGCCATCATCATTGCAAATAAAAAGCTTGTGCATCAATGTACCCTTCACGAGACAATTCGCGTAAAGA GTGGAGCCTGGGATGACAATGGTGTGTTCATATATTCTACTTTAAACCACATGAAGTATTGCCTTCCGAATGGAGATAGTGGGATAATCAGAACCCTTGA TGTCCCAATATACATTACCAAGATTTCTGGAAACACAATTTTTTGCTTGGATAGAGAAGGGAAGAACCGCTCAATCGTCATTGATGCTACAGAATACATG TTCAAACTGTCTCTTCTCAAAAAGAGATATGATCATGTTATGGGCATGATCAGGAACTCACAGCTGTGTGGGCAGGCTATGATTGCATATTTGCAGCAGA AGGGGTTCCCAGAAGTTGCTTTGCATTTCGTCAAGGATGAAAGAACACGGTTTAATTTGGCTCTTGAAAGTGGCAACATACAGATTGCCGTCGCTTCAGC CAAAGAAATTGACGAGAAAGATCATTGGTACAGGCTAGGAGTGGAAGCTCTGCGCCAAGGCAATGCAGGTATCGTGGAATACGCCTATCAGAGAACGCAG AATTTCGAGAGGTTGTCTTTCTTATATCTGATCACAGGGAATATAGAAAAACTGTCAAAGATGCTGAAAATTGCCGAGGTTAAGAATGATGTCATGGGTC AGTTCCACAATGCCCTCTATTTGGGCGACATTCACGAGCGTGTGAAGATACTCGAGACTTCTGGTCAGATACCCTTGGCCTACATCACAGCTAAAGTGCA CGGGCTCGAGGAAGTAGCCGAGCGTCTAGCAGCAGATTTGGGAGATAATGTTCCGTCTTTGCCCGAGGGTAAAGTGCCGTCTCTCCTGATGCCTCCAACG CCCATCATGAGTTCTGGTGATTGGCCCCTACTGAGGGTTATGAAAGGAATCTTTGAAGGTGGACTTGAAAACATGGCAAGAGCCGACGATGACGATGAAG AAGAAGCAATCGAAGGTGATTGGGCGGAGGAACTTGAACTGGTTGATGCTAATGGTTTACAGAATGGGAACGCAGAAGCTGGTTTGGAGGATGGTGAAGT TGGCGAAGACAATGATGAAGGAGGTTGGGATCTTGAAGGCTTGGATCTACCACAAGAGGCCGATACCCCGAGAGCTTCTGCAAGTGCTCAATCCTCGGTC TTCGTAGCTCCAACTCCTGGCATGCCTGTGAGTCACATATGGACTCAAAAGTCGTCACTTGCTGGTGAGCACGTTGCAGCGGGGAATTTCGATACTGCCA TGAGACTGCTCCATAGGCAAATCGGAATAAAGAATTTTGGTCCGTTGAAATCAATGTTCATGGATCTTCACACCGGAAGCCAGTCCTACCTGCGAGCTAT GTCAGCCACTTCCGTGGTAACGCTAGCAGTCGAAAAATGGAACGAGTCTGCAAGCCCGAATGTAAGGGGCGCTCCATCGCTGGTTTTCAGTTTCACTCAG CTGGAAGAAAAGCTCAAGGTCGGCTACAAATCCACCACAACTGGGAAATTCACCGAGGCTCTCAGGATCTTTGTCGGCATTCTTCACACAATCCCTCTGA TTGTTGTGGAGACACGGAGGGAGGTTGATGAGGTCAAGGAGCTGATCATCCTAGTCAAGGAATACGTCCTGGGGCTACAGATGGAGCTCCAAAGAAGAGA AATGAAAACCGACCATCCGGTTCGCCAGCTGGAACTGGCTGCCTATTTTACACACTGCAATCTCCAAACCCCTCACTTACGGCTGGCATTGCTGAACGCG ATGACGATAAGCTACAAGGCGAAGAACTTTGCCACGGCCGCTAATTTCGCCCGGCGTCTCCTGGAGACAAACCCACAAGTCGAGAATCAGGCGAAGACGG CTAGACAGGTGTTGCAGGCTTCGGAGAGGAACATGACCGATGCCACACAGCTGAACTACGATTACCGGAATCCGTTCGTGGTGTGTGGGGCTACTTACGT GCCGATATATAGAGGGCAGAAGGATGTTTCGTGCCCGTATTGTTCGGCTAAGTTCGTTCCGGCTGAGGATGGGAAGATATGTGCGGTTTGTGATCTTGCG GTTGTTGGTAGTGATGCTTCTGGGTTGATGTGTTCGTCTTCTCAGGTGCGTTGA
AA sequence Show only first row Show all	>Lus10011454 pacid=23182653 polypeptide=Lus10011454 locus=Lus10011454.g ID=Lus10011454.BGIv1.0 annot-version=v1.0 MLTKFETKSSRVKGLSLHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQ FHHEYPWIVSASDDQTIRIWNWQSRACISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDTSALKKKTASPSDDIMGLSQLNGDLFGGIDAVVKYVL EGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDLTKRTGLQTFRREQDRFWILAAHP EMNLLAAGHDTGMIVFKLERERPAFAVSGDSLFYTKDRFLRFFEYSSQKENQVIPIRRPGSASLNQSPRTLSYSPTENAVLLCSDIDGGSYELYIIQKDS VLRGDSVQDAKRGAGASAVFIARNRFAVLDKSSNQVLVKNLKNEVVKKSALPIATDAIYYAGTGSLLCRAEGRVVIFDLQQRLVIGDLPASVVKYVVWSN DMESVALLSKHAIIIANKKLVHQCTLHETIRVKSGAWDDNGVFIYSTLNHMKYCLPNGDSGIIRTLDVPIYITKISGNTIFCLDREGKNRSIVIDATEYM FKLSLLKKRYDHVMGMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTQ NFERLSFLYLITGNIEKLSKMLKIAEVKNDVMGQFHNALYLGDIHERVKILETSGQIPLAYITAKVHGLEEVAERLAADLGDNVPSLPEGKVPSLLMPPT PIMSSGDWPLLRVMKGIFEGGLENMARADDDDEEEAIEGDWAEELELVDANGLQNGNAEAGLEDGEVGEDNDEGGWDLEGLDLPQEADTPRASASAQSSV FVAPTPGMPVSHIWTQKSSLAGEHVAAGNFDTAMRLLHRQIGIKNFGPLKSMFMDLHTGSQSYLRAMSATSVVTLAVEKWNESASPNVRGAPSLVFSFTQ LEEKLKVGYKSTTTGKFTEALRIFVGILHTIPLIVVETRREVDEVKELIILVKEYVLGLQMELQRREMKTDHPVRQLELAAYFTHCNLQTPHLRLALLNA MTISYKAKNFATAANFARRLLETNPQVENQAKTARQVLQASERNMTDATQLNYDYRNPFVVCGATYVPIYRGQKDVSCPYCSAKFVPAEDGKICAVCDLA VVGSDASGLMCSSSQVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62020			Coatomer, alpha subunit (.1)		Lus10011454 [exp]	0	1
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	1.0	0.9814
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	1.4	0.9749
AT4G21700			Protein of unknown function (D...		Lus10005493 [exp]	2.0	0.9486
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10015105 [exp]	2.4	0.9488
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	3.2	0.9451
AT5G16300			Vps51/Vps67 family (components...		Lus10037382 [exp]	5.1	0.9338
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	6.0	0.9430
AT1G05520			Sec23/Sec24 protein transport ...		Lus10021964 [exp]	6.6	0.9195
AT2G01970			Endomembrane protein 70 protei...		Lus10031876 [exp]	7.0	0.9426
AT3G57890			Tubulin binding cofactor C dom...		Lus10023821 [exp]	8.0	0.8784

Compare expression of checked genes

Lus10011454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.