Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79910 217 / 1e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 154 / 9e-44 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G32350 160 / 1e-43 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 120 / 2e-30 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G34220 109 / 3e-26 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G25420 101 / 3e-24 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT2G14830 97 / 4e-22 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G19710 91 / 9e-20 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 88 / 1e-18 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 78 / 8e-16 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037536 [exp] 476 / 3e-169 AT1G79910 191 / 2e-57 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025932 [exp] 308 / 6e-98 AT5G48840 440 / 2e-149 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10035885 [exp] 290 / 2e-94 AT1G79910 235 / 1e-72 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025779 [exp] 245 / 1e-76 AT1G79910 199 / 8e-59 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10034905 [exp] 199 / 3e-58 AT4G32350 256 / 3e-75 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10023635 [exp] 196 / 5e-57 AT4G32350 252 / 9e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10038167 [exp] 148 / 8e-40 AT5G48840 447 / 7e-155 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10006061 [exp] 124 / 2e-31 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028724 [exp] 122 / 6e-31 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G181300 [exp] 246 / 9e-77 AT1G79910 244 / 1e-75 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054500 [exp] 224 / 2e-68 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.018G079500 [exp] 180 / 3e-51 AT4G32350 240 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.003G054700 [exp] 166 / 5e-47 AT1G79910 141 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054601 [exp] 161 / 3e-45 AT1G79910 140 / 3e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.013G117100 [exp] 121 / 3e-30 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 115 / 1e-28 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.008G121300 [exp] 112 / 3e-28 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.019G087400 [exp] 114 / 7e-28 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.013G135700 [exp] 100 / 3e-23 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10011455 pacid=23182590 polypeptide=Lus10011455 locus=Lus10011455.g ID=Lus10011455.BGIv1.0 annot-version=v1.0 ATGTTTGATAGCTTGACCAAGTCCAAATTCTACACGAAATGCAAGTCGTTGACGAAGATGACGAAGGTGAGGCTGGATTCGTCGGCGAAGAAGAAGAAAG CTGTGGCTAAGTATCTGAGACGCGACATCGCTGAGCTTCTGAGGAATGGCCTCAATTCCAATGCTTACGGCAGGGCTGAAGGGCTTATAGTGGAGCAGAA CATGGTAGCTGCTTACAAGTTCATGGACGAATTCTGCGACTGCATTTCCACCAATCTTGCTACCTTAGACAAACAGATGGAATGCCCAAAGGAATGCAGA GAAGCCATACAGAGTTTGATGTATGCAGCAGCGAGGTTTGCGGAGTTCCCAGAACTCCGCGACCTTCGATCTGTGTTTGCACAGAGATACGGAGATTGTC TCGAATTGTTTCTTAACAAAGAGTTTGGTGAGCTACTGAATCCAAGGCCTGCTACAAAGGAGATGAAGCTTCAGCTACTTGTTGATGTTGCGCAAGAATT CTCCATCGAATGGGATCCGAAACTTTTCGATCAGAAGCTCTCGAAACCTGACAATAATCCTCATGGTGTAGCGAACTTGTCGAGAAGACGGAGCGAAGCA GGAGCAGAACCAGCTGCTCCGGTTTACGTCAGAGCCAGGAGTGACTCCACAGCAACAAGGAGAGCCTCCATTAGTACTGCTTCTCCCGTTGCTTCAGATG ATAATAATCCTTCCAAGTTCATGCCTCCGCCACCGTATGTCCGGGCCAATCCTGAAGCCTTACAACAGAAGCCTCGATCCGTTCGACAAAGGCAACAGGC AACAAAACTGGATGAGGAGGAAAGGAAGCTCAACGAGCTATTGATACAGCAGAGCGGAAAGAGAACGACGGCTTACGAGAGGAGCGTTACTCATACAACC GGTACGAAGCCTCTTTCTTGGCGGTCAAGGGACGGTGATCAGAGGCATGCTCGATCTCTATCAGAAGTGCCTTCAGGACATGTGCATCCGAACCTACCTG ATTACGATTCGTTGGCGGATCGGATCGCTTCGATCAAGGGGGAAAATTGGTGA
AA sequence Show only first row Show all	>Lus10011455 pacid=23182590 polypeptide=Lus10011455 locus=Lus10011455.g ID=Lus10011455.BGIv1.0 annot-version=v1.0 MFDSLTKSKFYTKCKSLTKMTKVRLDSSAKKKKAVAKYLRRDIAELLRNGLNSNAYGRAEGLIVEQNMVAAYKFMDEFCDCISTNLATLDKQMECPKECR EAIQSLMYAAARFAEFPELRDLRSVFAQRYGDCLELFLNKEFGELLNPRPATKEMKLQLLVDVAQEFSIEWDPKLFDQKLSKPDNNPHGVANLSRRRSEA GAEPAAPVYVRARSDSTATRRASISTASPVASDDNNPSKFMPPPPYVRANPEALQQKPRSVRQRQQATKLDEEERKLNELLIQQSGKRTTAYERSVTHTT GTKPLSWRSRDGDQRHARSLSEVPSGHVHPNLPDYDSLADRIASIKGENW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	0	1
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10034045 [exp]	1.0	0.9375
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	4.0	0.9036
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	5.2	0.8687
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	5.7	0.8962
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10005113 [exp]	7.3	0.8473
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	8.1	0.8804
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018721 [exp]	9.0	0.8320
AT5G35370			S-locus lectin protein kinase ...		Lus10028067 [exp]	9.3	0.8120
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	11.0	0.8809
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10020037 [exp]	11.0	0.8472

Compare expression of checked genes

Lus10011455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.