Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49420 56 / 3e-09 MADS MADS-box transcription factor family protein (.1) AT5G60440 53 / 3e-08 MADS AGL62 AGAMOUS-like 62 (.1) AT5G38620 52 / 7e-08 MADS MADS-box transcription factor family protein (.1) AT5G49490 52 / 1e-07 MADS AGL83 AGAMOUS-like 83 (.1) AT5G04640 49 / 1e-06 MADS AGL99 AGAMOUS-like 99 (.1) AT1G46408 47 / 3e-06 MADS AGL97 AGAMOUS-like 97 (.1) AT2G24840 47 / 4e-06 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT1G65360 46 / 4e-06 MADS AGL23 AGAMOUS-like 23 (.1) AT1G01530 46 / 5e-06 MADS AGL28 AGAMOUS-like 28 (.1) AT1G60880 44 / 3e-05 MADS AGL56 AGAMOUS-like-56 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020511 [exp] 45 / 1e-05 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10012449 [exp] 45 / 1e-05 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084100 [exp] 50 / 3e-07 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.006G258550 [exp] 50 / 4e-07 AT5G60440 82 / 1e-17 AGAMOUS-like 62 (.1) Potri.006G258500 [exp] 49 / 6e-07 AT5G60440 84 / 6e-18 AGAMOUS-like 62 (.1) Potri.017G124000 [exp] 49 / 7e-07 AT5G60440 83 / 5e-18 AGAMOUS-like 62 (.1) Potri.012G110100 [exp] 49 / 1e-06 AT5G60440 81 / 5e-17 AGAMOUS-like 62 (.1) Potri.004G002400 [exp] 45 / 9e-06 AT5G60440 107 / 3e-28 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 44 / 2e-05 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 43 / 4e-05 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.017G047300 [exp] 43 / 8e-05 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.008G041500 [exp] 41 / 0.0002 AT5G60440 147 / 4e-43 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10011456 pacid=23182596 polypeptide=Lus10011456 locus=Lus10011456.g ID=Lus10011456.BGIv1.0 annot-version=v1.0 ATGGAATTACGACAATCTCCATCCAGTCTATCAACCTCATTCACCAAGAGACGCCAAGGCCTTTTCAGCAAGGTCTCCCAGGTCTGCTTGCTTTGTGACG CCAATGTCGCCGCCTTCGCCTCTTCCCCTGCCAAAAAATCCCCTCCCAAATTCTTCTCCCTCGGCCACCCTTCCGTCGACTCCGTCCTCAACGACCTAAC CGGCAGAAACCCAGTTCCTAAATTGGGGGATTTAATCAGCAAGCGGACGGCCCAGCATGTTTTGCGACTCGCTAACCCGCCGGTTCGTAAATCGGCGGCG GGTTTAAACGGATTGAGTAATGCAATTGAGGAGATGGTGAACGGAGGCGGGGATTTGAAGGTACTGGTGGAGCTGTTGAGGAAGATGAAGAGTACGGCGG AGGCGAAATCGGGCGGCCGGAAACAGATCATTCCCCAAATTGGATCGTCGGACTTGGTCGCCGTCGGCGGCAGCGGCGGCGGTGATAATGATTCTGTGAA ATTGATGTCTTCTGGGAATGAAGAACAAGAAACAAATTGGATGGAGGTGGAGGATAATTACGACATCGGCAGCAGTAGTACTAATATATCGTTGTTTTCG ACAGTGGTTCCATCGTGGTCTTGCTTGAGAGATGCGCCGATTTGGTCGAGATTCGAAGGTTATTCAGAGGGGATGCTCTGTTAA
AA sequence Show only first row Show all	>Lus10011456 pacid=23182596 polypeptide=Lus10011456 locus=Lus10011456.g ID=Lus10011456.BGIv1.0 annot-version=v1.0 MELRQSPSSLSTSFTKRRQGLFSKVSQVCLLCDANVAAFASSPAKKSPPKFFSLGHPSVDSVLNDLTGRNPVPKLGDLISKRTAQHVLRLANPPVRKSAA GLNGLSNAIEEMVNGGGDLKVLVELLRKMKSTAEAKSGGRKQIIPQIGSSDLVAVGGSGGGDNDSVKLMSSGNEEQETNWMEVEDNYDIGSSSTNISLFS TVVPSWSCLRDAPIWSRFEGYSEGMLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49420	MADS		MADS-box transcription factor ...		Lus10011456 [exp]	0	1
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10039011 [exp]	1.0	0.8193
AT4G31380		FLP1	FPF1-like protein 1 (.1)		Lus10040802 [exp]	18.8	0.7990
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026013 [exp]	20.8	0.7670
AT4G34880			Amidase family protein (.1)		Lus10002804 [exp]	28.0	0.7785
AT3G18790			unknown protein		Lus10008882 [exp]	48.5	0.6485
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10033663 [exp]	68.6	0.6595
AT3G44150			unknown protein		Lus10023845 [exp]	104.6	0.6733
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000201 [exp]	110.2	0.6579
AT3G24150			unknown protein		Lus10043262 [exp]	120.2	0.6745
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10043362 [exp]	165.6	0.6409

Compare expression of checked genes

Lus10011456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.