Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65320 438 / 1e-152 Cystathionine beta-synthase (CBS) family protein (.1) AT5G53750 88 / 5e-19 CBS domain-containing protein (.1) AT4G27460 75 / 1e-14 Cystathionine beta-synthase (CBS) family protein (.1) AT1G15330 50 / 1e-06 AtPV42a Cystathionine beta-synthase (CBS) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037535 [exp] 664 / 0 AT1G65320 483 / 2e-170 Cystathionine beta-synthase (CBS) family protein (.1) Lus10042702 [exp] 93 / 1e-20 AT5G53750 278 / 3e-90 CBS domain-containing protein (.1) Lus10025651 [exp] 91 / 5e-20 AT4G27460 301 / 2e-99 Cystathionine beta-synthase (CBS) family protein (.1) Lus10029665 [exp] 88 / 6e-19 AT5G53750 283 / 2e-92 CBS domain-containing protein (.1) Lus10018183 [exp] 76 / 7e-15 AT4G27460 298 / 3e-98 Cystathionine beta-synthase (CBS) family protein (.1) Lus10004227 [exp] 45 / 6e-05 AT1G15330 418 / 5e-146 Cystathionine beta-synthase (CBS) protein (.1) Lus10029432 [exp] 45 / 0.0001 AT1G15330 398 / 6e-139 Cystathionine beta-synthase (CBS) protein (.1) Lus10030788 [exp] 43 / 0.0003 AT1G69800 491 / 4e-173 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G087100 [exp] 465 / 2e-163 AT1G65320 521 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.019G052650 [exp] 459 / 6e-161 AT1G65320 516 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.004G041000 [exp] 89 / 4e-19 AT5G53750 295 / 6e-97 CBS domain-containing protein (.1) Potri.001G402900 [exp] 83 / 3e-17 AT5G53750 372 / 7e-127 CBS domain-containing protein (.1) Potri.011G050500 [exp] 80 / 3e-16 AT5G53750 261 / 1e-83 CBS domain-containing protein (.1) Potri.011G122000 [exp] 80 / 4e-16 AT5G53750 355 / 6e-120 CBS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10011457 pacid=23182600 polypeptide=Lus10011457 locus=Lus10011457.g ID=Lus10011457.BGIv1.0 annot-version=v1.0 ATGGCTTCAGTGTTCCTCTATCACGTAGTGGGAGATCTAACCGTGGGGAAGCCGGAGCTGGTGGAGCTCTGCGACTCCGAGACTGTCGAGTCCGCCATAA AAGCGATCGGGGACTCCACCGAGTGCGGGATCCCAGTGTGGAAGAAGAGATCCAGCTTGATCGAAACCAGCGACATGAGGCAACAGAGGTTCGTGGGTAT TCTCAATTCCCTCGATATCGTCTCCTTTCTCGCTAGGCCGGATTGCTTGGCCGATCAGGAGATGGCCATGCGTGCAAAGGTTTCTGAGGTCGTTGTTCAT AACAATTCGCTGCTCAAACAGGTCGATCCTGGAACAAGACTGATAGATGCATTAGAAATGATGAAGCAAGGAGTGAGACGTCTTCTCGTCCCCAAAACAA AAGGTTGGAAGCGCGTAAGCAAGAGATTCTCAGTCTATTACCACGGCAAATGGCTCAAGAACGCAACCGACACTCCGAACAGCAGCAGCAATAACCTCAT CATCAACTCCGCCAACCTCCCTTCATCGTCTTCCCCCGCTGCTAGCCATGACAAATTCTGCTGCCTCTCCAGAGAAGACGTTATCCGCTTCCTCATTGGC TGCCTCGGCGCTCTAGCACCGATTCCTCTTTCCTCAATCTCCTCCTTAGGAGCCATCAACCTAAACTACAAACTCGTCGACTCCTCTCTTCAAGCGATCG AAGCAACACGCAAGGCTCCCGATGATCCCAGCGCGGTTGCTATTGTGGAGGCTGTCTCAGACCGCCAGTACAAGATAATCGGAGAGATATCGGCTTCTAG GTTGTGGAAGTGTGATTATTTGGGATCGGCATGGGCTCTAGCGAATCTCTCTGCCGGACAGTTTGTGATGGGCGTGGAAGATGCAGGTTCGGCTTTCTCG TCTGATTCCCCGATGAGGAGTAGGAAGTTGAGTAGTGGAAGGAGCGGAGGGTTCGAGATCGCGAGTTCGGGAAGGATGATGTATAGGGGAAGAAGTGCTC CTTTGACTTGTAAAGTGAAGAGTTCGTTAGCTGCAGTGATGGCTCAGATGCTTTCTCACAGGGTGACCCATGTGTGGGTGACTGAAGAAGATAGCGACGA TGTCTTGGTCGGGATGGTTGGTTATGCTGATATTTTGGCGACCATGACGAAAGAACCTGCCTCTGTCCCGTTGCCTGCATCATGA
AA sequence Show only first row Show all	>Lus10011457 pacid=23182600 polypeptide=Lus10011457 locus=Lus10011457.g ID=Lus10011457.BGIv1.0 annot-version=v1.0 MASVFLYHVVGDLTVGKPELVELCDSETVESAIKAIGDSTECGIPVWKKRSSLIETSDMRQQRFVGILNSLDIVSFLARPDCLADQEMAMRAKVSEVVVH NNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKTKGWKRVSKRFSVYYHGKWLKNATDTPNSSSNNLIINSANLPSSSSPAASHDKFCCLSREDVIRFLIG CLGALAPIPLSSISSLGAINLNYKLVDSSLQAIEATRKAPDDPSAVAIVEAVSDRQYKIIGEISASRLWKCDYLGSAWALANLSAGQFVMGVEDAGSAFS SDSPMRSRKLSSGRSGGFEIASSGRMMYRGRSAPLTCKVKSSLAAVMAQMLSHRVTHVWVTEEDSDDVLVGMVGYADILATMTKEPASVPLPAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65320			Cystathionine beta-synthase (C...		Lus10011457 [exp]	0	1
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10007766 [exp]	7.1	0.8686
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10030760 [exp]	13.0	0.8861
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10018324 [exp]	15.9	0.8602
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	17.3	0.8731
AT5G15460		MUB2	membrane-anchored ubiquitin-fo...		Lus10030704 [exp]	19.1	0.8548
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10037459 [exp]	19.5	0.8497
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10027027 [exp]	19.5	0.8496
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10004107 [exp]	21.5	0.8079
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	21.6	0.8742
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10021385 [exp]	23.8	0.8471

Compare expression of checked genes

Lus10011457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.