Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52330 157 / 5e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT4G13270 129 / 4e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037534 [exp] 331 / 2e-116 AT1G52330 160 / 2e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10043216 [exp] 134 / 6e-39 AT4G13270 228 / 8e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011095 [exp] 132 / 3e-38 AT4G13270 234 / 3e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10023631 [exp] 131 / 9e-38 AT4G13270 235 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10024264 [exp] 104 / 2e-27 AT4G13270 210 / 8e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 41 / 0.0003 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10040941 [exp] 40 / 0.0006 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G055000 [exp] 188 / 4e-60 AT1G52330 181 / 1e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.001G180600 [exp] 187 / 1e-59 AT1G52330 192 / 9e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.006G159400 [exp] 127 / 1e-36 AT4G13270 228 / 3e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 60 / 7e-11 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 50 / 2e-07 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10011458 pacid=23182637 polypeptide=Lus10011458 locus=Lus10011458.g ID=Lus10011458.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCCGCCGAACAATCCGATCCAAAATCGTCACAACCCGACAGCTCAGTTCCCCTGTTATCATCCGCAGCACCCATCTCACCAACCCAAAACG ACGCCGTTCGGTACGCTTCCCGCAGCCGACGGCGGACAATACTCACCACCACTGCCACGGTGGCAGCATCTCTCACCGTTTTCCTCCTCATCCTCGCATC TGGCTACGAATTCTGGCCGTCGGATCCGACACTGACGATCGCACGGCTGCGGCTGACCAAGGTCAAAATCCGGACATTCCCTGTCCTGAACATCGACATA ACAATGAACGTGACGATGGAGGTGCGGAACGCCGACGTCTACACGGCGGAGCTGAGGAGGATGGATGTGGAGGTGATGTACAGAGGGAAGCGGATCGGGG AGGTGAAAATCGGAAAGGAGGAAGTGATCCGAGCTTATGCAACGTCGTATTTGGAGGCGGAGATGAAGCTGAACGGGATCGGAGTGATCTCCGACGCGCT GTTGCTGATCGGAGACTTGAAGAAGGGGAAAGTGCCGTTTGGTACGGTTGTTGAAGTCGGTGGGAAGTTTGGTTTCCTCTGTTTTGGGTTCCCTTTGAAG GCGAAATTGTCATGCCAAGTTTTGCTCAACGCCCACAATCAAACCATCGTCCGCCAGAGCTGCTACCCTCTCTAG
AA sequence Show only first row Show all	>Lus10011458 pacid=23182637 polypeptide=Lus10011458 locus=Lus10011458.g ID=Lus10011458.BGIv1.0 annot-version=v1.0 MAAAAEQSDPKSSQPDSSVPLLSSAAPISPTQNDAVRYASRSRRRTILTTTATVAASLTVFLLILASGYEFWPSDPTLTIARLRLTKVKIRTFPVLNIDI TMNVTMEVRNADVYTAELRRMDVEVMYRGKRIGEVKIGKEEVIRAYATSYLEAEMKLNGIGVISDALLLIGDLKKGKVPFGTVVEVGGKFGFLCFGFPLK AKLSCQVLLNAHNQTIVRQSCYPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52330			Late embryogenesis abundant (L...		Lus10011458 [exp]	0	1
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	1.7	0.9336
AT4G27270			Quinone reductase family prote...		Lus10007612 [exp]	3.5	0.9068
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10013298 [exp]	5.2	0.8968
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	5.7	0.8866
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	7.1	0.9187
AT3G02360			6-phosphogluconate dehydrogena...		Lus10034102 [exp]	7.7	0.8800
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	9.5	0.9002
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	9.6	0.9228
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10026143 [exp]	10.2	0.9147
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021050 [exp]	11.1	0.8426

Compare expression of checked genes

Lus10011458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.