Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20300 668 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 192 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74900 189 / 4e-54 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 186 / 2e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 185 / 5e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 177 / 4e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 171 / 3e-46 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G65820 169 / 1e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 169 / 5e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT3G48810 166 / 2e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037533 [exp] 677 / 0 AT1G20300 472 / 2e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 200 / 3e-57 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 191 / 4e-54 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 190 / 6e-53 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030887 [exp] 186 / 3e-52 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039021 [exp] 185 / 1e-51 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008102 [exp] 172 / 9e-47 AT5G11310 620 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019141 [exp] 166 / 2e-44 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 166 / 2e-44 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245400 [exp] 684 / 0 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245500 [exp] 526 / 0 AT1G20300 571 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 206 / 3e-60 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 189 / 2e-53 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 189 / 2e-52 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G066700 [exp] 181 / 3e-50 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 181 / 2e-49 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G070200 [exp] 175 / 1e-48 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 177 / 2e-48 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 175 / 3e-47 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011459 pacid=23182657 polypeptide=Lus10011459 locus=Lus10011459.g ID=Lus10011459.BGIv1.0 annot-version=v1.0 ATGGCGGCAATCCACTCCCGCCTCCGTCTTCCAAACTCCTTTTCTCCCCTCTCACAACGCTTCCTTCAATCTTCATTCTCTTCTTCCACAACAGTCTCAC AACAATCCACCATCCACTCCAACGAAGAAGAATCCGACTCCAACGGTATCCCCGGCGATCACACAACCACCGCCGTCCTGCCACCGGAAGAAGCCGCCAT AGTCGAGAAATTCCGTTCCTTAATCAAACACCATTACCGCAACAACCCGGATCCAAACCCTACCTCCTGCAGTCCCAATTTCACCATCCCATCTCTCTCC CACGACTTCTCCGAAATCGCCGGAACCCTAACGCCTTCCCTAATCCGGAGCGTCATCAAGAAATGCGGCGGCGGCCGCCACGGAATCCCTTTCCACCAGA CCCTTGCGTTCTTCAACTGGTCAATCAATCAACAGGATGAGAAATCTCAATCTCCATCTCTCTCCCCTGAACCGTACAACGAGATGGTGGATCTCGCCGG AAAGATGAAACTCTTCGATCTAGCATGGAGCGTGATCGATCTCATGAAGGAGAGAACCGTCGAGATCACACCGGAAACCTTCTCCATCCTCATCCGCCGC TACATCCGCGCCGGATTCCCCAGCGAGGCCATCCACGCGTTCAATCGCATGGAGGATTACAACTGTAAGCCCGATTTGACTTCCTTCTCCGTCGTGATCA GTAATCTCTGCAGGAAACGGCTAGCCGCCGAAGCTCAATCCTTTTTCGACGAACTGAGATCGAAATTCAATCCGGACGTTATCGTCTACACTAACCTGGT CCGCGGATGGTGCCTTGCGGGAAACATACAGAATGCACAGAAAGTGTTCGACGAAATGAAAACCGCCGGAATCCAACCCAATGTGTATACTTACACCATT GTGATCGACAACTTATGTAGATGCGGCCAGAGCACTCGAGCTTTCGATGTATTCGCGGAGATGATCGATTCTGGCTGCCAGCCGAATTCTGTAACTTTCA ACAATCTGATGAGAGCTCACGTCAAAGCCGGAAGAACAGAGAAAGTTCTGCAGGTGTACAATCAGATGAAGCAGCTGAACTGCCAGCCGGATACAGTCAC CTGCAATTTCCTGATCGAGACTCACTGTAAAGACAACAATCTCGAAGCAGCCATGAAAGTTCTGAACTCCATGAAGGCTGTGCCGAATGCTTCGACTTTC AATACATTGTTTGGTTGCCTCGCGAAGCTGCGGGATGTGAATGGAGCTCACCGGCTGTGGGCGAAGATGAAGGAGGCGGGATGCAGGCCGAACGTGGTGA CATACAACAAGTTGATGAGTATGTTTGTGGAGTCGAAGTCGACGGATATGGTGTTGAAGATGAAGAAGGAGATGGACGAGGAGGAAGTCGAGGTGAATGT TAATACGTACCGGATTTTGATCGGGATGTACTGTGGGATGGGGCATTGGAACAATGCCTACAAGTTTTTCAGGGAGATGATTGAGGAGAAAGGGTTGAAA CCGAGCCAGAATATTTACGAGTTGGTTTTGCAGCAGTTGAGGAAAGCGGGGCAGTTGCAGAAGCATGAGGAGCTTGTGGAGAAGATGGTGAAGAGAGGAT TCGCCACCAGGCCATTGTAG
AA sequence Show only first row Show all	>Lus10011459 pacid=23182657 polypeptide=Lus10011459 locus=Lus10011459.g ID=Lus10011459.BGIv1.0 annot-version=v1.0 MAAIHSRLRLPNSFSPLSQRFLQSSFSSSTTVSQQSTIHSNEEESDSNGIPGDHTTTAVLPPEEAAIVEKFRSLIKHHYRNNPDPNPTSCSPNFTIPSLS HDFSEIAGTLTPSLIRSVIKKCGGGRHGIPFHQTLAFFNWSINQQDEKSQSPSLSPEPYNEMVDLAGKMKLFDLAWSVIDLMKERTVEITPETFSILIRR YIRAGFPSEAIHAFNRMEDYNCKPDLTSFSVVISNLCRKRLAAEAQSFFDELRSKFNPDVIVYTNLVRGWCLAGNIQNAQKVFDEMKTAGIQPNVYTYTI VIDNLCRCGQSTRAFDVFAEMIDSGCQPNSVTFNNLMRAHVKAGRTEKVLQVYNQMKQLNCQPDTVTCNFLIETHCKDNNLEAAMKVLNSMKAVPNASTF NTLFGCLAKLRDVNGAHRLWAKMKEAGCRPNVVTYNKLMSMFVESKSTDMVLKMKKEMDEEEVEVNVNTYRILIGMYCGMGHWNNAYKFFREMIEEKGLK PSQNIYELVLQQLRKAGQLQKHEELVEKMVKRGFATRPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10011459 [exp]	0	1
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10018588 [exp]	2.4	0.9279
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	4.2	0.9332
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10015340 [exp]	5.5	0.9243
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10024950 [exp]	6.3	0.9237
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10017852 [exp]	7.3	0.9180
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10003171 [exp]	8.5	0.9224
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	10.4	0.9038
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	12.2	0.9136
AT5G06550			unknown protein		Lus10029343 [exp]	12.6	0.9186
AT3G15000			cobalt ion binding (.1)		Lus10043130 [exp]	13.5	0.9208

Compare expression of checked genes

Lus10011459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.