Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79950 1041 / 0 RAD3-like DNA-binding helicase protein (.1) AT1G20720 404 / 7e-123 RAD3-like DNA-binding helicase protein (.1) AT1G20750 315 / 5e-91 RAD3-like DNA-binding helicase protein (.1) AT1G79890 217 / 2e-58 RAD3-like DNA-binding helicase protein (.1) AT1G03190 188 / 2e-49 ATXPD, UVH6 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) AT2G05635 46 / 2e-05 DNA repair DEAD helicase RAD3/XP-D subfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037532 [exp] 1829 / 0 AT1G79950 1010 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10012249 [exp] 284 / 4e-79 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10016027 [exp] 275 / 1e-76 AT1G20720 955 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10014662 [exp] 183 / 1e-47 AT1G03190 1402 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Lus10011447 [exp] 144 / 1e-34 AT1G79890 1036 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10037548 [exp] 105 / 7e-23 AT1G79890 645 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10000652 [exp] 76 / 4e-14 AT1G03190 533 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G180200 [exp] 1287 / 0 AT1G79950 1042 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G008700 [exp] 350 / 7e-103 AT1G20720 1164 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.001G182600 [exp] 221 / 8e-60 AT1G79890 947 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G054000 [exp] 175 / 5e-45 AT1G03190 1410 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06733 [flax] [poplar] DEAD_2 DEAD_2
Representative CDS sequence Show only first row Show all	>Lus10011460 pacid=23182624 polypeptide=Lus10011460 locus=Lus10011460.g ID=Lus10011460.BGIv1.0 annot-version=v1.0 ATGCCGACATACAAGCTCAGAGGAATCGATGTGGATTTCCCGTTCGAGGCGTACGATTGCCAGCTCGTTTACATGGAGAAAGTGATCGAATCTCTCCAAA ATAAATGCAATGCACTTTTGGAGAGCCCTACTGGAACTGGGAAGACTCTGTGTCTTCTCTGTGCTACATTGGCTTGGCGGAAGAGTTTAGGTGAATTTTC TACTGGTAAATCAGCGGAGTCTCATTCATCGCAGTCGAGCAGTAGTTCTCTTCCTACGATAGTGTATACTTCACGAACTCACAGCCAGCTTCGTCAAGTG ATCCAAGAGTTGAAGAGGAGCAGCTACAGGCCTAAAATGGTAATATTAGGGTCCCGGGAACAGTTGTGCATTCATGAAGAAGTCAGTACATTACGCGGAA AAGCTCAGACAAATGCTTGCCGTCACATTTCCAGAAATCGTGGGAAGCGTCAATGTTCCCATTTCTGTCAAGTTTCTGGTAGTTCTACTGCACTCTTACA ATGCTTCAATTACGTAAAACAGAATCCACAGCTTGGAGATGAACCTGTTGACATAGAAGATTTGGTTAAAATTGGGAAGCAATTTGGACCGTGCCCATAC TATTTATCAAGGGACATCCATAAATCTGTAGACATATTATTTGCACCTTATAATTATCTAATTGATCGTAGCAACAGAAAATCTCTTACCGTTGATTGGG AGAGTAGTATACTAATATTTGATGAAGCACACAATCTGGAGGGTATATGTGCTGACGCTGCATCTTTTGATCTCCCTTCTGGTCTTCTGACAACTTGCAT TTCTGAAGCACAATCCTGTATTGATCTGGCTATATTAAGAAAGGATATATCACAGAATCCTGAGAATTTCGCCATTCTTAAAGGCGAGTTTATATTTTCT ACAAATTTCACATTGCTTCTGAAGCTTGAGAAGCAGATAGCCGAGCTACCCATCGAATCCAGTGAATTAGGATTCACTAGGCCTGGACCGTACATTTATG AACTACTTGCTGACCTGAATCTTACGCATGACACTGCATCCAAGCTCATTGATACAATCGATGAAGGTGCTTTGCTTTTCGAAGAAGATAAACAGAAAAC AGCAAAAGGCGCAGTCTTTCGCCTTGAAAGTATTGCTGACATTCTTAAACTAGTGTTTAAAGAGAAAGACAATAGCCATGCAACTTATTATCGTGTTCAT GTCCGTGAAGGCCAAGTTTATGCTCCTGAAGGCTTTAAAGGTAAGGCATCGAGAACTTTAAGCTGGTGGTGCTTTAATCCAGGCATTGCCGTGGAAGAAT TCGCCCAGATGGGTGTTGGCTCTATCATTTTGACTTCTGGGACATTACCACCTATGGAGTCATTTGCTCAAGAGTTGAAACTGAGCTTTCCTGTACGGTT GGAGAACCCTCATGTCATATCTGAAAATCAGATTTGGGCAGGGGTTGTTCCGGTTGGCCCATCAGGGCATTCATTTAACTCATCTTATAGAAATCGTGAT TCTCAAGAATACAAGAGAGAGTTGGGAAATGCTATTGTTAATTTCGCTCGGATTGTACCTGATGGACTGCTTGTGTTCTTTCCTTCATACTACGTTCTGG ACAAATCCATCGAATGCTGGAAGACGGATAATCATAACTCAACACCAATATGGGAAAGAATCTGCAGGTACAAGAAACCAGTTATAGAACCTAGACAATC ATCTCTTTTTCCATCGGCAATTGAGGATTATATGGCTAAGTTGAAGGATACCTCACATTCGGGTGCAGTATTTTTTGCTGTTTGTCGTGGCAAGGTCAGT GAAGGATTAGATTTTGCAGATCATGCTGGGAGGGCTGTAATCATAACTGGAGTTCCTTTTCCCATGTGGCATGACCCCAAGGTTCGATTGAAGCGCGAGT TCTTGGATCATCAAGCTGTGTTCTCAAAGGGTGAATTCAAGTCGGACATTCTAACTGGTGAAGGCTGGTACGGCCAGCAAGCATCACGGGCTGTCGAAGG CTGGTACAGCCAACAAGCATCACGGGCTGTGAATCAGGCTGTTGGACGTGTGATTCGCCATCGACATGATTATGGAGCAATTATATTCTGTGATGAAAGG TTTTCAAATGCAAATCAGCAGTCCCAAATTTCACGTTGGATAAGGCCTTATCTTAAGTGTCACCCTGGTTTTGGAGATGTGATTTTCACACTAAGCCGGT TTTTCCACAATGGAGCGTTTAGTGATTCAACGGTGCTCGAGTCTACAGAACAAGTCACTCAAGAGAAGATGTCGCGGGAAATGGTAAAAGTTCATGTGGT CATTCCAATAAATAAGAAGACTTCCGATATATCTTCGGTGTTTCCTTCACTTCAAGGCAAAAGCTTCATGGATTCAAGCAAATTACACGAAGTTCTTCCA GCTAATGGTGCATCTCCTAATCCTCCAAAAAACAAACAAGACTTCATATTGAAGTATTCAAAAGGGTTAATATCAAAAGAGAGAAAATCGCTTGTTCTGG GAGGTAATGCTGTAAAGCTTCAAGATAAGGAGATGGTTTATCTGACTAGTGAATCTTTGGCTAGGGGAATTCCTAGTGGACACGGACTGATGCCATGTGG TGCTAAGAAGCGTAAGATTTCGAAGGGAGGGCACAACGAAGAGATTGATGAACGATCAACATCAAACAATTCTGGATCTAAGGAGCAATTTACCTTGGAT GATAGAACCCAATCGAATGCTTTGGCTAGATCACAAGTATCGTTTGAACGTGGGCTCCCTCAGAAGGGGATAACTGACCCAGCTCATCGTTCTAACGCGT TGGTTACCGGAGAAAAGGAAGCAAAAGGGTCAGACTTTCTAAATCAGGCCAAGGAGAAACTCAGTGCCTCGGAATATACCGAGTTTGTGAGCCTTATGAA AGGCTTGAGATCCAAAGTCATGAAAATAGGGCATGTACTACCGTCTATTGTCAAATTATTCTCCGGCCCAGAGAGGTTTCCACTGCTTGAAAGATTCAGA GATTATGTACCTGCAAAGTATCGTCCTCTGTATGAGCAGTACATTGGAACAAAGGGTCAACCATCTCGTACCATGGAATCGGAGGGAAAGGACCGTTGA
AA sequence Show only first row Show all	>Lus10011460 pacid=23182624 polypeptide=Lus10011460 locus=Lus10011460.g ID=Lus10011460.BGIv1.0 annot-version=v1.0 MPTYKLRGIDVDFPFEAYDCQLVYMEKVIESLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGEFSTGKSAESHSSQSSSSSLPTIVYTSRTHSQLRQV IQELKRSSYRPKMVILGSREQLCIHEEVSTLRGKAQTNACRHISRNRGKRQCSHFCQVSGSSTALLQCFNYVKQNPQLGDEPVDIEDLVKIGKQFGPCPY YLSRDIHKSVDILFAPYNYLIDRSNRKSLTVDWESSILIFDEAHNLEGICADAASFDLPSGLLTTCISEAQSCIDLAILRKDISQNPENFAILKGEFIFS TNFTLLLKLEKQIAELPIESSELGFTRPGPYIYELLADLNLTHDTASKLIDTIDEGALLFEEDKQKTAKGAVFRLESIADILKLVFKEKDNSHATYYRVH VREGQVYAPEGFKGKASRTLSWWCFNPGIAVEEFAQMGVGSIILTSGTLPPMESFAQELKLSFPVRLENPHVISENQIWAGVVPVGPSGHSFNSSYRNRD SQEYKRELGNAIVNFARIVPDGLLVFFPSYYVLDKSIECWKTDNHNSTPIWERICRYKKPVIEPRQSSLFPSAIEDYMAKLKDTSHSGAVFFAVCRGKVS EGLDFADHAGRAVIITGVPFPMWHDPKVRLKREFLDHQAVFSKGEFKSDILTGEGWYGQQASRAVEGWYSQQASRAVNQAVGRVIRHRHDYGAIIFCDER FSNANQQSQISRWIRPYLKCHPGFGDVIFTLSRFFHNGAFSDSTVLESTEQVTQEKMSREMVKVHVVIPINKKTSDISSVFPSLQGKSFMDSSKLHEVLP ANGASPNPPKNKQDFILKYSKGLISKERKSLVLGGNAVKLQDKEMVYLTSESLARGIPSGHGLMPCGAKKRKISKGGHNEEIDERSTSNNSGSKEQFTLD DRTQSNALARSQVSFERGLPQKGITDPAHRSNALVTGEKEAKGSDFLNQAKEKLSASEYTEFVSLMKGLRSKVMKIGHVLPSIVKLFSGPERFPLLERFR DYVPAKYRPLYEQYIGTKGQPSRTMESEGKDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79950			RAD3-like DNA-binding helicase...		Lus10011460 [exp]	0	1
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	4.5	0.9184
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000317 [exp]	4.5	0.9119
AT5G39900			Small GTP-binding protein (.1)		Lus10015364 [exp]	4.6	0.8837
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	8.1	0.9177
AT3G21540			transducin family protein / WD...		Lus10033802 [exp]	9.5	0.9106
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	9.9	0.9154
AT1G74350			Intron maturase, type II famil...		Lus10021359 [exp]	16.4	0.8644
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	19.3	0.8784
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10007498 [exp]	23.2	0.9063
AT1G77600			ARM repeat superfamily protein...		Lus10018180 [exp]	25.8	0.9020

Compare expression of checked genes

Lus10011460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.