Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79930 1226 / 0 AtHsp70-14, HSP91 heat shock protein 91 (.1.2) AT1G79920 1226 / 0 AtHsp70-15 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G11660 721 / 0 heat shock protein 70 (Hsp 70) family protein (.1) AT5G28540 271 / 4e-80 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 271 / 4e-80 HSP70B heat shock protein 70B (.1) AT5G42020 271 / 5e-80 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 270 / 1e-79 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G12580 263 / 4e-77 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G09080 257 / 6e-75 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G09440 256 / 8e-75 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037531 [exp] 1504 / 0 AT1G79920 1269 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10037529 [exp] 1427 / 0 AT1G79930 1313 / 0.0 heat shock protein 91 (.1.2) Lus10011463 [exp] 1164 / 0 AT1G79920 1167 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10019627 [exp] 746 / 0 AT1G11660 916 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10040078 [exp] 735 / 0 AT1G11660 919 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10002319 [exp] 270 / 1e-79 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10005953 [exp] 270 / 2e-79 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 264 / 3e-77 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 259 / 2e-75 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G180100 [exp] 1239 / 0 AT1G79920 1262 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G055800 [exp] 1236 / 0 AT1G79920 1283 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.011G139100 [exp] 774 / 0 AT1G11660 990 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.004G016700 [exp] 749 / 0 AT1G11660 1025 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 283 / 1e-84 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 274 / 5e-81 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.012G017600 [exp] 273 / 1e-80 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.010G206600 [exp] 269 / 3e-79 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 268 / 7e-79 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G087500 [exp] 268 / 8e-79 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10011461 pacid=23182601 polypeptide=Lus10011461 locus=Lus10011461.g ID=Lus10011461.BGIv1.0 annot-version=v1.0 ATGAGTGTGGTTGGTTTTGATTTCGGGAATGAGAACTGCATTGTTGCTGTGGCGAGGCAGAGAGGGATTGATGTCGTTCTCAACGATGAATCCAAACGCG AGACTCCAGCCATTGTGTGCTTCGGAGAGAAGCAGAGGTTTATCGGTACTGCAGGGGCTGCTACAACAATGACCAACCCTAAGAACTCTATTAGTCAGAT CAAGCGTTTAATTGGACGAACGTTTAATGATCCTGAGCTGCAGAAGGATCTCAAGTCGTTGCCGTACACTGTCACTGAGGGTCCTGATGGATTCCCTTTG ATTCATGCTCGCTATTTGGGTGAAATGAGGACATTCACGCCTACCCAGGTTCTAGGAATGGTGCTGTCTAATTTGAAAGAGATAGCTGAGAAGAATCTCA ATGCTGCTGTTGTTGATTGCTGCATAGGGATCCCGGTTTATTTCACCGACCTACAGAGAAGAGCAGTCATGGATGCTGCGACAATTGCAGGCCTACATCC ACTTCGTTTGTTTCATGAAACGACGGCTACTGCTCTTGGTTATGGCCTTTACAAGACTGACCTGCCTGAAAACGACCAACTGAATGTTGCCTTTGTTGAT GTTGGACATGCAAGCATGCAAGTATGCATTGTGGGATTCAAGAAAGGGCAGCTTAAGGTACTAGCACATGCTTTTGATCGGTCTCTTGGAGGAAGAGACT TCGATGAAGCTCTATTCAACCACTTTGCTGCGAAATTCAAAGATGAGTACAAGATAGATGTTTTCCAGAATGCGAGGGCTTGTCTCAGGCTCAGGGCAGC TTGTGAGAAGCTAAAGAAGGTTCTCAGTGCCAATCCAGAGGCTCCTCTAAATATTGAGTGTTTGATGGAGGAGAAAGACGTGAGAGGCTTCATTAAGAGA GATGAGTTTGAACAGATAAGTATGCCTATATTGGATCGTGTGAAAAAGCCATTGGAGAAGGCCCTTCAGGATGCCGGACTAACAGTGGAGGATGTTCACA CCGTTGAGGTTATTGGTTCCGCATCTCGTATACCTTCTGTTTTTAAAATATTAACAGAGTTTTTCGGCAAGGAGCCCAGGAGGTCCATGAATGCTAGTGA GTGTGTCGCCAGGGGTTGTGCTTTGCAATGTGCTATACTCAGTCCCACGTTCAAAGTAAAAGAATTCCAGGTTCATGAAAGCTTTCCGTTTTCCATTGCT TTGGCGGGCAAAGGTTCTGGACCTGACACTCAAAATGGAACTGCCGATAATCAGCAGAGCACAACTGTTTTTCCCCGAGGAAATGCTCTGCCCAGTATCA AAGTTCTGACATTTTATCGGCCAGGGACATTCTCTGTTGATGTTCAATATGCAGACACGGATGGGCTGCTGGCTCCTGCTACGATCGGCTCATACATGAT TGGGCCTTTCCAGGCCACAACGAATTGCAAGGTTAAGGTGAAAGCTCGCTTGAATCTGCATGGTATTGTATCTGTGGAATCTGCACAGCTATTGGAAGAA GAAGAGGTTGAGATACCCGTCTCCAAAGAGGCCCCCACCAAGATGGAGACTGATGATAATCCAAGTGATGCTGTACATCCCAGCGGAAGTGAAGCTGATT TAAAACCGCAAGGAGATGATACTGGTGCTGAAAATGGGGTTTCCGAACTTACACAGATGGAAACAGATAGCAAGGCTGATGGTCCCAAGAAGAAAGTTAA GAAATCCAACATTCCGGTTTCTGAACTTGTCCACGGTGGAATGCCTTCTGCCGATCTTCAGAAAGCAGTGGAAAAGGAGTTTGAGATGGCTTTACAAGAT CGCGTGATGGAGGAAACCAAGGACAAGAAAAATGCTGTTGAGTCTTACGTCTATGATATGAGGAACAAACTTGGTGACAAACTTCAGGACTTCGTTACCG AGCCGGATAAGGAAGAGTTCTTGAGCAAACTACAGCTGGTAGAGGACTGGTTGTATGAAGATGGAGAAGATGAAACCAAAGGCGTTTACGTCGAAAAGCT CGAAGAGCTCAAGAAGCAAGGTGATCCGATTGAGCACCGGTACAAGGAGCATTCGGAGAGGGGATCCGTGATTGACCAACTTGTTTATTGCGTCAACAGT TACAGAGAAGCTGCCATGTCTAGTGACCCTAAATTCGAGCACATTGACGTGGCTGAAAAACAAAAAGTGCTGAACGAATGCGTGGAGGCGGAATCATGGC TAAGGGAGAAGCAACAGCAGCAAGACTCCCTGCCTAAGTACGCCACTCCAGCTCTCTTGTCTGCCGATGTGAGGAAGAAAGCTGAAGCTCTCGACCGGTT TTGCCGGCCAGTGATGACGAAACCCAAACCTACCCCGCCAAAGCCATCAACTCCTGAAGCACCTACTGCTGCATCTCCTGAGCAGCAACCTCAAGGCAGC GAAGGAAATGCAAATGATGCCGATGCAGACGAGAACACAGGTGGTTACCACGATGATTCCTCTTCCCCGGGGGAGCCAATGGAAACTGCCGACCAAGGTG CTTCAACCAAAGCTTAG
AA sequence Show only first row Show all	>Lus10011461 pacid=23182601 polypeptide=Lus10011461 locus=Lus10011461.g ID=Lus10011461.BGIv1.0 annot-version=v1.0 MSVVGFDFGNENCIVAVARQRGIDVVLNDESKRETPAIVCFGEKQRFIGTAGAATTMTNPKNSISQIKRLIGRTFNDPELQKDLKSLPYTVTEGPDGFPL IHARYLGEMRTFTPTQVLGMVLSNLKEIAEKNLNAAVVDCCIGIPVYFTDLQRRAVMDAATIAGLHPLRLFHETTATALGYGLYKTDLPENDQLNVAFVD VGHASMQVCIVGFKKGQLKVLAHAFDRSLGGRDFDEALFNHFAAKFKDEYKIDVFQNARACLRLRAACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKR DEFEQISMPILDRVKKPLEKALQDAGLTVEDVHTVEVIGSASRIPSVFKILTEFFGKEPRRSMNASECVARGCALQCAILSPTFKVKEFQVHESFPFSIA LAGKGSGPDTQNGTADNQQSTTVFPRGNALPSIKVLTFYRPGTFSVDVQYADTDGLLAPATIGSYMIGPFQATTNCKVKVKARLNLHGIVSVESAQLLEE EEVEIPVSKEAPTKMETDDNPSDAVHPSGSEADLKPQGDDTGAENGVSELTQMETDSKADGPKKKVKKSNIPVSELVHGGMPSADLQKAVEKEFEMALQD RVMEETKDKKNAVESYVYDMRNKLGDKLQDFVTEPDKEEFLSKLQLVEDWLYEDGEDETKGVYVEKLEELKKQGDPIEHRYKEHSERGSVIDQLVYCVNS YREAAMSSDPKFEHIDVAEKQKVLNECVEAESWLREKQQQQDSLPKYATPALLSADVRKKAEALDRFCRPVMTKPKPTPPKPSTPEAPTAASPEQQPQGS EGNANDADADENTGGYHDDSSSPGEPMETADQGASTKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10011461 [exp]	0	1
AT5G47400			unknown protein		Lus10004740 [exp]	3.2	0.8288
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10026137 [exp]	13.4	0.8053
AT1G18950			DDT domain superfamily (.1)		Lus10042167 [exp]	17.4	0.8136
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10032597 [exp]	20.2	0.7174
AT3G01160			unknown protein		Lus10028412 [exp]	24.2	0.7374
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10036594 [exp]	25.2	0.7603
AT1G61690			phosphoinositide binding (.1)		Lus10007623 [exp]	28.1	0.7347
AT5G47400			unknown protein		Lus10007801 [exp]	28.4	0.7744
AT3G22790			Kinase interacting (KIP1-like)...		Lus10039359 [exp]	30.5	0.7688
AT1G75640			Leucine-rich receptor-like pro...		Lus10033926 [exp]	32.7	0.7333

Compare expression of checked genes

Lus10011461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.