Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40430 156 / 6e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037530 [exp] 382 / 3e-131 AT2G40430 218 / 3e-66 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G075700 [exp] 302 / 4e-101 AT2G40430 211 / 4e-64 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07767 [flax] [poplar] Nop53 Nop53 (60S ribosomal biogenesis)
Representative CDS sequence Show only first row Show all	>Lus10011462 pacid=23182631 polypeptide=Lus10011462 locus=Lus10011462.g ID=Lus10011462.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGTCGAAGAGTTCAAGGAAAGGCAAGAAAGCATGGAGAGCTAACATAAGCACCGCCGACGTCGATGACTTCATCGAGAAATCAACCAAAG ACGCCCTCACCGGCGGCTCCCTCTCCGAAGTCTCCAACGAATCCCTCTTCTTCGTCGACAAAGACAAAGATCTTACTGTGAGGAGGAAGATAGAAAAACG TAGGGAGAAAGTGCTTCACTGTGACAGTGTTCTGCAGAAAAACCCGTTTGTTAAAGTAGTACCATCTTCAAAGGAGAATAAACCTATCAACAGCAAGAAG AAGAAGAAGAATATGAAAGACAAAAGTGAGGCTGCAGTGGCAAAAGATGATATTGCTCAGGATGTTGAGTCTGGCATTACTGATTTATGGGAAAAGGAAG GTATGACGGATATCCTAACTTCCGACATGGATTCCTTGGCACAAGCTGTTGCGGAAGAGATGCAGAAAGTCTACAAAAATGAGCTAGGCCCTCAGCCTGT CCCTTTAACTGTACAGGGAGAGGCTATTGGGGAAGAAGAGATGTACTTTCTTGAGGTGGATAATGAGTATGATGAAGCAATTGAGGAGAATGAAGATAAT GCTGAAGAAAAAAGCTCTTCCAAAAGGAAAAGAGTGACTCGAGTTGAATCGAATAGAAGAGCCAGACGTAAAGAGCTACGTAGCAAAGAAGCTGAAGCCA AAAAGAAGAAGGAACTGTTAAAAGAAATTGACAGCTTGCCGAAAATCCTTGAAGAAATAGCGAAAGAAGATGAAGAGAAGCAAAATCGACATACACGCCG GACAGTAGCAAAGGAGGAAAGACTAAAGACAAGACCTCCACGACTCGGAAAGCACAAATTTGAGCCTGCTCCTACTCAAGTACTGTTGTCAGAAGAAATT ACAGGATCCCTTCGCAAGTTGAAGGGGTGTTGCACGCTTGCAACAGACAGGTTCAAGAGCCTAGAGAAGAGAGGATTGATCCCTCCATCATCCAACAAGA AGAGGAGGAGGTCTTAA
AA sequence Show only first row Show all	>Lus10011462 pacid=23182631 polypeptide=Lus10011462 locus=Lus10011462.g ID=Lus10011462.BGIv1.0 annot-version=v1.0 MGKKSKSSRKGKKAWRANISTADVDDFIEKSTKDALTGGSLSEVSNESLFFVDKDKDLTVRRKIEKRREKVLHCDSVLQKNPFVKVVPSSKENKPINSKK KKKNMKDKSEAAVAKDDIAQDVESGITDLWEKEGMTDILTSDMDSLAQAVAEEMQKVYKNELGPQPVPLTVQGEAIGEEEMYFLEVDNEYDEAIEENEDN AEEKSSSKRKRVTRVESNRRARRKELRSKEAEAKKKKELLKEIDSLPKILEEIAKEDEEKQNRHTRRTVAKEERLKTRPPRLGKHKFEPAPTQVLLSEEI TGSLRKLKGCCTLATDRFKSLEKRGLIPPSSNKKRRRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40430			unknown protein		Lus10011462 [exp]	0	1
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	2.0	0.9350
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	2.4	0.9224
AT3G15080			Polynucleotidyl transferase, r...		Lus10011026 [exp]	5.7	0.8952
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10019439 [exp]	7.1	0.9185
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	13.0	0.9061
AT2G37990			ribosome biogenesis regulatory...		Lus10019422 [exp]	15.8	0.8835
AT5G08540			unknown protein		Lus10010158 [exp]	17.5	0.8400
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	17.9	0.8907
AT3G62310			RNA helicase family protein (....		Lus10005261 [exp]	20.3	0.8850
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	20.6	0.8935

Compare expression of checked genes

Lus10011462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.