Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79930 1126 / 0 AtHsp70-14, HSP91 heat shock protein 91 (.1.2) AT1G79920 1124 / 0 AtHsp70-15 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G11660 666 / 0 heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 225 / 1e-63 HSP70B heat shock protein 70B (.1) AT5G28540 224 / 6e-63 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 222 / 2e-62 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 219 / 1e-61 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G12580 219 / 2e-61 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT3G09440 213 / 3e-59 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 213 / 5e-59 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037529 [exp] 1415 / 0 AT1G79930 1313 / 0.0 heat shock protein 91 (.1.2) Lus10011461 [exp] 1306 / 0 AT1G79930 1282 / 0.0 heat shock protein 91 (.1.2) Lus10037531 [exp] 1276 / 0 AT1G79920 1269 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10019627 [exp] 689 / 0 AT1G11660 916 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10040078 [exp] 664 / 0 AT1G11660 919 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10002319 [exp] 226 / 7e-64 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10005953 [exp] 224 / 3e-63 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 215 / 5e-60 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10021345 [exp] 209 / 1e-58 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G180100 [exp] 1160 / 0 AT1G79920 1262 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G055800 [exp] 1153 / 0 AT1G79920 1283 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.011G139100 [exp] 719 / 0 AT1G11660 990 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.004G016700 [exp] 677 / 0 AT1G11660 1025 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 232 / 4e-66 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G087500 [exp] 225 / 1e-63 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 224 / 3e-63 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042600 [exp] 224 / 3e-63 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G206600 [exp] 224 / 3e-63 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 222 / 1e-62 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10011463 pacid=23182629 polypeptide=Lus10011463 locus=Lus10011463.g ID=Lus10011463.BGIv1.0 annot-version=v1.0 ATGAGTGTGGTCGGTTTTGATTTTGGGAATGAGAACTGCATTGTTGCTGTGGCGAGGCAGAGAGGGATTGATGTCGTTCTTAATGACGAATCCAAGCGCG AGACTCCGGCCATTGTTTGCTTCGGAGAGAAGCAGCGGTTTATTGGTACTGCTGGGGCTGCGACGACTATGACAAACCCTAAGAACTCTATTAGTCAGAT CAAGCGTTTGATTGGCCGCACGTTCAATGACCCTGAGTTGCAGAAGGATCTCAAGTCGTTTCCCTACACTGTCACGGAAGGGCCTGATGGATTCCCTTTG ATTCATGCTCGCTATTTGGGTGAGATGAGGACATTCACGCCTACCCAGGTTCTTGGGATGGTGCTGTCTAATTTGAAAGAGATAGCTGAGAAGAACCTGA ATGCAGCTGTTGTTGATTGCTGCATAGGGATTCCTGTTTATTTCACTGATCTGCAGAGAAGAGCAGTCATGGATGCTGCGACGATTGCGGGACTACATCC ACTTCGTTTGTTTCATGAAACGACGGCTACTGCTCTTGGTTATGGCATTTACAAGACTGACCTTCCTGAAAATGATCAAGTGAATGTTGCGTTTGTTGAT GTTGGACATGCAAGCATGCATTGTCTCAGGCTTAGGGCAGCTTGTGAGAAGCTAAAGAAGGTTCTCAGTGCGAATCCCGAGGCTCCTCTGAATATCGAGT GCTTAATGGAGGAGAAAGATGTGAGAGGATTCATCAAGAGAGACGAGTTTGAACAGATTAGTATGCCGATATTGGATCGTGTGAAAAAGCCATTGGAGAA GGCTCTTCAAGATGCAGGACTTACAGTTGATGGTGTTCACACTGTTGAGGTTATTGGTTCTGCCTCTCGTATACCTTCTGTTTTCAAGATATTGACAGAG TTTTTCGGTAAGGAGCCCAGGCGGTCCATGAATGCGAGTGAGTGCGTTGCCAGGGGCTGTGCCTTGCAATGTGCTATGCTCAGTCCCACCTTCAAAGTCA GAGAATTCCAGGTTCATGAGAGCTTTCCGTTCTCCATAGCTCTGACCTGGAGAGGTTCTGCACCTGACACTGAAAATGGCTCTGCTGATAATCAACAGAG CACTGTTGTTTTTCCCCGTGGAAATGCGTTGCCCAGTATCAAATCTCTGACATTCTTTCGGCAAGAAACATTCTCTGTTGATGTTCAATATACAGACACG GATGGACTTCAGGCACCTACGAAGATCAGCTCTTATACGATTGGCCCTTTCCAGGCCACAAAGAATGATCGTGCTAAGGTCAAGGTGAGAGCTCGCTTGA ATCTACATGGTATTGTATCTGTGGATTCTGCACAGCTATTGGAAGAAGAGATTGAGATACCTGCTTCCAAAGAGGCCCCCACCAAGATGGAGATTGATGA TAATCCGAGTGATGCTGTACCTCCCAGCGGAAGTGATGCTGATGTAAAACCGCAAGTAGATGGTACTGGTGCTGAAAATGGGGTTTCGGACTCTGGTGAG AAACCTACACAGATGGAAACAGATAGCAAGGCCGATGCTCCCAAGAAGAAAGTTAAGAAATCCAACATTCCGGTTTCTGAACTCGTCCATGGTGGATTAC CTTCAGCTGATCTTCAGAAAGCAGTTGAAAAGGAGTTTGAGATGGCTTTACAAGATCGTGTGATGGAGGAAACCAAAGACAAGAAGAATGCCGTCGAAGC TTATGTGTATGAAATGAGGAACAAACTTGGTGACGTGTTCCATGACTTTGTTACGGAGCCAGAGAGGGAAGAGTTCTTGAGCAAACTACAGCTGGTAGAG GATTGGCTGTATGAAGATGGAGAAGATGAAACCAAAGGCGTTTACGTCGCCAAGCTGGAAGAGCTCAAGAAGCAAGGTGATCCAATTGAGCACCGGTACA AGGAGCATTCCGAGAGGGGATCCGTAGTCGACCAACTTGTTTATTGTGTCAACAGTTACAGAGAAGCTGCAACGTTGACTGACCCTAAATTCGAGCACAT TGACATGGCCGAAAAGCAGAAAGTATTGAGTGAGTGCGTGGAGGCGGAATCGTGGCTAAGGGAGAAGAAGCAGCAGCAAGACTCCCTGCCTAAGTATGCT AATCCGGCTCTCTTGTCTGCTGATGTGAGGAAGAAAGCTGAAGCCCTTGACAGGTTCTGCAGGCCAGTGATGACGAAAGCCAAGCCGGCCCCGCCGAAGC CAGCAACTCCCGAGGCACCTGCAGCATCACCCGAACAGCAACAGCCTCAAGGAAGCGAGGGCTACCCCGCGAATGCTGGTACCCCTGACGCAAACGAGAA TAACAATGCTGATGGCGCTGCTGTGGCTGGGGAGCCCATGGAAACCGACGGCCAAGATGCTTCGACCAAAGCACAGTGA
AA sequence Show only first row Show all	>Lus10011463 pacid=23182629 polypeptide=Lus10011463 locus=Lus10011463.g ID=Lus10011463.BGIv1.0 annot-version=v1.0 MSVVGFDFGNENCIVAVARQRGIDVVLNDESKRETPAIVCFGEKQRFIGTAGAATTMTNPKNSISQIKRLIGRTFNDPELQKDLKSFPYTVTEGPDGFPL IHARYLGEMRTFTPTQVLGMVLSNLKEIAEKNLNAAVVDCCIGIPVYFTDLQRRAVMDAATIAGLHPLRLFHETTATALGYGIYKTDLPENDQVNVAFVD VGHASMHCLRLRAACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISMPILDRVKKPLEKALQDAGLTVDGVHTVEVIGSASRIPSVFKILTE FFGKEPRRSMNASECVARGCALQCAMLSPTFKVREFQVHESFPFSIALTWRGSAPDTENGSADNQQSTVVFPRGNALPSIKSLTFFRQETFSVDVQYTDT DGLQAPTKISSYTIGPFQATKNDRAKVKVRARLNLHGIVSVDSAQLLEEEIEIPASKEAPTKMEIDDNPSDAVPPSGSDADVKPQVDGTGAENGVSDSGE KPTQMETDSKADAPKKKVKKSNIPVSELVHGGLPSADLQKAVEKEFEMALQDRVMEETKDKKNAVEAYVYEMRNKLGDVFHDFVTEPEREEFLSKLQLVE DWLYEDGEDETKGVYVAKLEELKKQGDPIEHRYKEHSERGSVVDQLVYCVNSYREAATLTDPKFEHIDMAEKQKVLSECVEAESWLREKKQQQDSLPKYA NPALLSADVRKKAEALDRFCRPVMTKAKPAPPKPATPEAPAASPEQQQPQGSEGYPANAGTPDANENNNADGAAVAGEPMETDGQDASTKAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10011463 [exp]	0	1
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025336 [exp]	1.0	0.9395
AT5G19130			GPI transamidase component fam...		Lus10032125 [exp]	1.4	0.9329
AT5G57460			unknown protein		Lus10007798 [exp]	2.2	0.9094
AT3G18420			Protein prenylyltransferase su...		Lus10031923 [exp]	2.4	0.9153
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10024407 [exp]	4.0	0.9138
AT2G32380			Transmembrane protein 97, pred...		Lus10039668 [exp]	5.3	0.9008
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10020363 [exp]	5.5	0.9016
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025354 [exp]	9.2	0.8844
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10006854 [exp]	9.5	0.8922
AT1G69430			unknown protein		Lus10037135 [exp]	11.0	0.8703

Compare expression of checked genes

Lus10011463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.