Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16010 877 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G06920 247 / 3e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20090 225 / 2e-64 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 219 / 1e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 222 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 218 / 3e-61 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 214 / 8e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 214 / 4e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 211 / 1e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 211 / 2e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043417 [exp] 251 / 1e-72 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036238 [exp] 234 / 1e-67 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 228 / 2e-65 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 223 / 2e-63 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 221 / 2e-61 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 218 / 5e-61 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 218 / 5e-61 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020002 [exp] 213 / 3e-59 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 213 / 1e-58 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G180000 [exp] 967 / 0 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G014100 [exp] 247 / 3e-71 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 234 / 7e-68 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 228 / 1e-65 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 225 / 1e-64 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 223 / 6e-64 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 229 / 7e-64 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.005G046200 [exp] 216 / 8e-62 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 214 / 2e-61 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 215 / 3e-61 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011464 pacid=23182626 polypeptide=Lus10011464 locus=Lus10011464.g ID=Lus10011464.BGIv1.0 annot-version=v1.0 ATGCACGGAAGGTGTTTGATGAAAGTACTCTCAGCTAGAATGATAGGTTCTACTCGTCTGTTCATCACCTCAAGGCGGTCCATTTCTAGCTTATCTAAAT CGTGCGACAGAATTAAGCAGACAGAAAATGAGATTGTCCAAATGTTCAAGATACCTGGTCCAAACCAAGAACCCGCTAGCCGGAAATTCTCGAGGAAGAG CACTTCCGTTAGAACTCTGGACGAAAGGTTCATCAGGATTCTTAAGATATTCAAGTGGGGTCCTGATGCTGAGAAGGCATTGGAAGTGCTCAAACTGAGA GTGGATCAACGCTTGGTTCGTGAAGTTTTAAACATAGATGTCGAGGTCAATGTCAAAGTTCAGTTCTTTAAGTGGGCTGGTAAGAGGAGGAATTTCGAGC ATGATTCCACCACTTACATGGCTTTGATTCATTGCTTGGATGAAGCTGGCTGGGTTAGTGAAATGTGGAAGACGATCCAAGAAATGGTGAGGGCTCCTTT CCTTTTATCTCCATCTGATCTATCCGACATTCAAAGAATCCTCGGGAGGTGCAAGATGGTAAACAAGGCGCTATCTGTGTTTTATCAAGTGAAAGGTCAC AAGTGCAAGCCGACTGTAGGTACTTACAACTCTGTGATACTGATGTTAATCCAACAAGGTCATCTTGAGAAGGTGCACGAACTTTATAACGAGATGTGCA ATGAAGTCGATTGCTTACCCGATACTGTGACGTACAGTGCAGTAATATCAGCTTTTTCTAAATTGGGTCGAGACGAGTCTGCTATAAGGTTGTTTGAGGA GATGAAGGAAAATGGCATACACCCTACAGCTAAAATCTACACTGTGGTGTTAGCAATTCACTTCAAGTCAGGAAATGTGGATAAAGGTTTGTCTTTGGTG CAGGAGATGAAGGACAATGGATGTCCGATGACTGTCTTTACTCGTACGGAATTGATTAAAGGTCTCGGAAAGGCCGGGAGGGTAAATGATGCATATGATG TGTTTTTAACTATGCTGAAGGAGGGTTGCAGGCCTGATACTATATTGATAAACAATATGATTAATATTCTGGGGAAAGCAGGTCGTTTGGAGGATGGGAT AAGTATTTTCAACCAGATGGAATCATGGAGGTGTTTGCCTAATGTTGTGACGTATAATACTATAATGAAAGCTTTGTTTGATCGGAAATCCCCGGCTTCT GAAGCTTCTTCATGGTTTGAGAGAATGAAGGCCAGTGGGATTGCCCCTAGTTCGTACACTTACGCAATTCTTATCGATGGCTTTTGCAAGACGAATAAAG TCGAGAAAGCTATGTTGCTTCTTGAAGAGATGGATGAAAAGGGTTTCCCTCCTTGTCCTGCTGCCTACTCTAGCCTGATCAATACTCTAGGCAATGCCAA GCGTTACGAAGCTGCGAATGAACTGTTTCGAGAATTGAGGGAGAATTGCGGACGATCAAGTGCTCGTGTTTATGCGGTTATGATCAAGCATTTCGGAAAG TGTGGCCGGCTCGATGATGCCGTCGATCTTTTTAAGGAGATGAAGAAGCTTGGTTGTAATCCGGATGTGTATGCTTACAATGCGCTCATGTCGGGGATGG TACGTGCTGGAATGGTGGATGAAGCTTATTCGATTCTTGGATCAATGGAACGAAATGGGTGTTGTCCGGACTTGAACTCGCACAATATTGTCTTGAATGG TTTGGCTAAAACTGGTGGCCCTAAACGAGCGATTGAGATGTTTGAGAAGATGAGACGTTCGAAAATCCAGCCTGATGTCGTCTCGTACAATACAGTTCTT GGTTGCCTTAGCCGTGCTGGCAAGTTTGAGGAGGCTACCAATTTGATGAAGGAGATGAAGAGCAAAGGGTTTGAGTATGATCTTATTACGTACTCCTCGA TTCTCGAGGCGGTCGGTACGATCGATGAAGAGCGTGGAGATGCTGTTGCTTGA
AA sequence Show only first row Show all	>Lus10011464 pacid=23182626 polypeptide=Lus10011464 locus=Lus10011464.g ID=Lus10011464.BGIv1.0 annot-version=v1.0 MHGRCLMKVLSARMIGSTRLFITSRRSISSLSKSCDRIKQTENEIVQMFKIPGPNQEPASRKFSRKSTSVRTLDERFIRILKIFKWGPDAEKALEVLKLR VDQRLVREVLNIDVEVNVKVQFFKWAGKRRNFEHDSTTYMALIHCLDEAGWVSEMWKTIQEMVRAPFLLSPSDLSDIQRILGRCKMVNKALSVFYQVKGH KCKPTVGTYNSVILMLIQQGHLEKVHELYNEMCNEVDCLPDTVTYSAVISAFSKLGRDESAIRLFEEMKENGIHPTAKIYTVVLAIHFKSGNVDKGLSLV QEMKDNGCPMTVFTRTELIKGLGKAGRVNDAYDVFLTMLKEGCRPDTILINNMINILGKAGRLEDGISIFNQMESWRCLPNVVTYNTIMKALFDRKSPAS EASSWFERMKASGIAPSSYTYAILIDGFCKTNKVEKAMLLLEEMDEKGFPPCPAAYSSLINTLGNAKRYEAANELFRELRENCGRSSARVYAVMIKHFGK CGRLDDAVDLFKEMKKLGCNPDVYAYNALMSGMVRAGMVDEAYSILGSMERNGCCPDLNSHNIVLNGLAKTGGPKRAIEMFEKMRRSKIQPDVVSYNTVL GCLSRAGKFEEATNLMKEMKSKGFEYDLITYSSILEAVGTIDEERGDAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16010			Pentatricopeptide repeat (PPR-...		Lus10011464 [exp]	0	1
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Lus10023486 [exp]	10.4	0.9072
AT3G55160			unknown protein		Lus10015366 [exp]	12.9	0.9036
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10033281 [exp]	13.1	0.8568
AT5G59980			Polymerase/histidinol phosphat...		Lus10028138 [exp]	20.0	0.8864
AT3G55160			unknown protein		Lus10007253 [exp]	20.3	0.9035
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	26.0	0.8925
AT1G26170			ARM repeat superfamily protein...		Lus10031911 [exp]	26.9	0.8924
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006876 [exp]	31.3	0.8916
AT3G61170			Tetratricopeptide repeat (TPR)...		Lus10024936 [exp]	31.7	0.8642
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	32.0	0.8907

Compare expression of checked genes

Lus10011464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.