Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10050 809 / 0 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT1G58370 763 / 0 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT4G08160 546 / 0 Atxyn3 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1.2) AT1G79990 140 / 3e-38 structural molecules (.1.2.3.4.5) AT4G33830 81 / 3e-15 Glycosyl hydrolase family 10 protein (.1) AT4G33840 79 / 1e-14 Glycosyl hydrolase family 10 protein (.1) AT4G38650 79 / 1e-14 Glycosyl hydrolase family 10 protein (.1) AT4G33820 76 / 9e-14 Glycosyl hydrolase superfamily protein (.1) AT4G33860 76 / 1e-13 Glycosyl hydrolase family 10 protein (.1) AT4G38300 73 / 1e-13 glycosyl hydrolase family 10 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028243 [exp] 1272 / 0 AT1G58370 1278 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007243 [exp] 1269 / 0 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10037528 [exp] 1202 / 0 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007242 [exp] 562 / 0 AT1G58370 1016 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028242 [exp] 547 / 3e-180 AT1G58370 998 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10013322 [exp] 100 / 4e-25 AT1G58370 90 / 8e-23 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10035895 [exp] 100 / 7e-25 AT1G79990 125 / 8e-35 structural molecules (.1.2.3.4.5) Lus10025054 [exp] 92 / 1e-18 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 82 / 1e-15 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113132 [exp] 844 / 0 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113066 [exp] 581 / 0 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.003G056100 [exp] 153 / 8e-43 AT1G79990 223 / 5e-76 structural molecules (.1.2.3.4.5) Potri.001G179500 [exp] 147 / 7e-41 AT1G79990 222 / 1e-75 structural molecules (.1.2.3.4.5) Potri.009G087800 [exp] 86 / 9e-17 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.004G173300 [exp] 81 / 2e-15 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 81 / 3e-15 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087900 [exp] 76 / 7e-14 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 69 / 2e-11 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09801 [flax] [poplar] SYS1 Integral membrane protein S linking to the trans Golgi network CL0202 [flax] [poplar] GBD PF02018 [flax] [poplar] CBM_4_9 Carbohydrate binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Lus10011465 pacid=23182648 polypeptide=Lus10011465 locus=Lus10011465.g ID=Lus10011465.BGIv1.0 annot-version=v1.0 ATGTTCTATGGCTCAACAGTGTGGGATCCATGGCTTATAGTCGCGCAGATCGTGTGCCTTCAATGCTTCTACTACCTTACCCTGGGATTCTCTCTCTCCC TTCTTGTAGGCATTCGCGTTTCTCGACTCAGTCTCGTCTACTTCTTTGATTTCGTCGCCGTCATCTCCTCATCCGCCACTGGTGTGTCATCGCCTCCTTC TTCCTCAGCTCACTCGCCGGTGTATGGGGGTTGGCCTTCATCGTTGACATGGTGGGTTGTCAACATTACTGGACTTGCAGTGATGGCGCTGCTTAGTGAA TACCTATGCGTTAGGCGTGAACGACGAGAAATTCCTCTTACACGAAATAGATCAAATTGGTACTTGTACTTGAAGCAAGAAACTAAAGGAGTTGATCTTT TTGGTTCTGCTTTTTCTTGCCAGACTATGGATGAGAACATGGGCAATTCAAACAGCAGTACCCATTTTTTGAATGATCCAGTCATCAATAACAGCATGAA AAATATCATCGTCAATCATGACTTTTCCGAAGGGCTCCAATCCTGGCACCCAAATTCTTGTGATGGATTTGTGGTTTCATCAAATTCAGATCGCCTAGGA CTTTCAGCAGCACTAGTAGGTGGTTATGCAGTTGTTTCAAACCGGAAACATTGCTGGCAAGGGATTGAACAAGATATCACTGCCAGGGTTTCTCCAGGAT TAACTTACACGGTTTCTGCCGTCGTTGGAGTATCAGGACATATTCAGGGATCCGCTGAGGTCATTGCTACTCTAAAACTTGAACAACAAGGATCAGGAAC CCAATACTTGCGTGTTGGAAAAGCTACTGTGTTGAAGGGGCAGCTCGAGATGCTGGAAGGAAATTTCTGTTTGCCAACTATTCCTGATCGGGTGGTCTTG TACTTTGAAGGACCTTCTGCTGGAGTAGACATACTAATAGCATCAGTGAAGGTTGCGGATGAAACGAATAAATATCTAAGCAATCGTGTGTCCAATATTA TACTAAACAACAACTTTTCTCAAGGACTGGAGTCGTGGAACACAAACCACTGTGACGGCTATGTGGTTAAGATAGACTTGAGTCACTTGGGAAGCTTAGC TAATGAAGCTGGAAGTTATGCAGTTGTCTCAAATAGAAATGAAAGCTGGCAGGGCCTGGAACAAGATATCACAAGCAAGGTTTCTCCTGGCTTAACATAC TTTGTTTCTGCCTTTGTTGGAGTGTCTGGGCAGATTAAAGGATCAGCTGAGGAGGTTAATGGAACTTTAAAATTGGAACACCAAGGCTCAGCAACGAACT ATCTGCCTGTTGGAAAAACTTCTGTGTGCAATGGGAAGTGGAAAAAGTTGGAAGGCTCATTCTCTTTATCAACTATGCCTGACCGCGTTGTCTTTTATAT CGAGGGGGCATCTCCAGGAGCCAACCTCTTGATAAAGTCTGTATTCATTGGCAATGCTGATTCCAGCAAGTCAATGGGTGTGAGGATTAGTCATGGGAGT TCTGCAAATGAAAATGAGAACCTCATAGTGAATCACAACTTTGAGGATGGCTTGAACAATTGGTCTGCTAGAGGGTGCAAGATCCTAGTACACAATTCGA AAGCTGACAGGAAAATTGTACAAGAGTCTAGCAAATTCATTGTAGTAGCAACAGGACGTACGGCGAGCTGGCATGGAATTCACCAGGAAATAACCGGGAG AGTACAGAGGAAGCTTGTGTACGAAGTCACTGCTATAGTGCGCATTTATGGCAACAATGTCACTTGTGCTGATGTACAAGCGACTTTGTGGGTGCGAAAT CCGGATAACCGAGAAGAATATATCGGCATTGCCAAGTCGCAGGCAAAAGACTCGGATTGGGTCAAGCTGCAGGGGAAGTTCCTTTTGAATGGCTCCCCTA AGAAAATAGTTGTGTATCTCGAAGGTCCACCTCCAGGGATTGATATTCTCGTAAATAGCTTCACTCTAAAACGTGCAAAGAAAGTCCTTTCCTCACCTCT TCAAATCGAGCATCCTGCATTTGGAGTGAACATACTTCATAACAGCGATCTGAGTGATGGAACGAATGGTTGGTTTCCTCTTGGCAATTGTTCTCTAACT GTTGCAACTGGTTCACCTCATGTAATTGCTCCGATGGCAAGAGAATCTCTTGGAGTTCACGAGCCTTTAAGCGGCCGGTGCATAGCTGTCACGAATAGAA CACAAACTTGGATGGGACCTGCACAAACGATCACCGACAAAGTGAAGCTCTTCTTGACATATCAGATAACTGCTTGGGTTAAGATTTGCCCTGGTGGTGC CAATGGACCTCAAAATGTGAATGTCGCACTCGGTGTAGACAATGAATGGGTAAATGGAGGACAAATTGAGATCAACGACGATCAATGGCACGAAATCGGT AGCTCTTTCAGAATAGAGAAGCAAGCATCCAAGATCATGGTTTACATCCAAGGTCCTGCTGTGGGAACAGATTTCATGGTTGCTGGACTTCAAATTTTTG CTGTTGATCGAGCAGCGAGATTCAACCACTTGAAAAGGCTTACTGACAAGATTCGAAAACGCGATGTTACCTTGAAGCTCACAGGAGCAAATTCAAGTTG CTTGCGTGGTACATTGGTGAAAGTTCGACAAACTCAGAACAGTTTTCCATTGGGGACGTGCATAAGCCGCAGCAACATTGACAACGAAGACTTCGTAAAT TTCTTTGTAAAGAATTTCAACTGGGCAGTGTTTGGGAACGAGCTGAAATGGTCTTGGACGGAGTCGCAGCAGGGAAGCCTTAACTACAAGGATGCCGACG ACATTCCAGCAATGGATCAAATCCTTGAACAAAGAAAACTTTATGAAAGCAGTGCGACTCCCGTAAAGTACCTCGAACAAGTTCTCAACTTGCAGGAGCA AGGTGCACCAGTTGGAGGCATTGGAATTCAAGGACACATAGATAATCCGGTCGGGCCGGTTGTTTGTTCAGCTCTTGACAAGCTCGGAATCCTAGGCCTT CCGATTTGGTTCACGGAGCTGGACGTATCGTCAGTTAACGAGCACGTTCGAGCGGAGGATTTGGAAGTCATGCTACGTGAAGCCTACGCGCATCCTTCAG TAGAAGGGATCGTGCTGTGGGGGTTCTGGGAGTTGTTTATGTGTCGAGAGAATTCGCACCTGGTTGATGCGGAAGGCGAGTTGAACGAAGCCGGGAGGAG ATTCTTGGCTCTCAAGGAAGAGTGGATGTCTCATGCTGATGGCTGCATCGGTGAGCATGGTGAGTTTGGATTCAGAGGGTTTCATGGGACTTACACGGTA GAGATTGTTGGCCTCGAGACAGTGGTTACCAAGACATTTGCAGTTGAAAAGGGTGATACTCCTTTGATCCTTTCCATTGATCTCTCAAACGCTTAA
AA sequence Show only first row Show all	>Lus10011465 pacid=23182648 polypeptide=Lus10011465 locus=Lus10011465.g ID=Lus10011465.BGIv1.0 annot-version=v1.0 MFYGSTVWDPWLIVAQIVCLQCFYYLTLGFSLSLLVGIRVSRLSLVYFFDFVAVISSSATGVSSPPSSSAHSPVYGGWPSSLTWWVVNITGLAVMALLSE YLCVRRERREIPLTRNRSNWYLYLKQETKGVDLFGSAFSCQTMDENMGNSNSSTHFLNDPVINNSMKNIIVNHDFSEGLQSWHPNSCDGFVVSSNSDRLG LSAALVGGYAVVSNRKHCWQGIEQDITARVSPGLTYTVSAVVGVSGHIQGSAEVIATLKLEQQGSGTQYLRVGKATVLKGQLEMLEGNFCLPTIPDRVVL YFEGPSAGVDILIASVKVADETNKYLSNRVSNIILNNNFSQGLESWNTNHCDGYVVKIDLSHLGSLANEAGSYAVVSNRNESWQGLEQDITSKVSPGLTY FVSAFVGVSGQIKGSAEEVNGTLKLEHQGSATNYLPVGKTSVCNGKWKKLEGSFSLSTMPDRVVFYIEGASPGANLLIKSVFIGNADSSKSMGVRISHGS SANENENLIVNHNFEDGLNNWSARGCKILVHNSKADRKIVQESSKFIVVATGRTASWHGIHQEITGRVQRKLVYEVTAIVRIYGNNVTCADVQATLWVRN PDNREEYIGIAKSQAKDSDWVKLQGKFLLNGSPKKIVVYLEGPPPGIDILVNSFTLKRAKKVLSSPLQIEHPAFGVNILHNSDLSDGTNGWFPLGNCSLT VATGSPHVIAPMARESLGVHEPLSGRCIAVTNRTQTWMGPAQTITDKVKLFLTYQITAWVKICPGGANGPQNVNVALGVDNEWVNGGQIEINDDQWHEIG SSFRIEKQASKIMVYIQGPAVGTDFMVAGLQIFAVDRAARFNHLKRLTDKIRKRDVTLKLTGANSSCLRGTLVKVRQTQNSFPLGTCISRSNIDNEDFVN FFVKNFNWAVFGNELKWSWTESQQGSLNYKDADDIPAMDQILEQRKLYESSATPVKYLEQVLNLQEQGAPVGGIGIQGHIDNPVGPVVCSALDKLGILGL PIWFTELDVSSVNEHVRAEDLEVMLREAYAHPSVEGIVLWGFWELFMCRENSHLVDAEGELNEAGRRFLALKEEWMSHADGCIGEHGEFGFRGFHGTYTV EIVGLETVVTKTFAVEKGDTPLILSIDLSNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10050			glycosyl hydrolase family 10 p...		Lus10011465 [exp]	0	1
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	2.2	0.9058
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	3.7	0.8970
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	5.9	0.8528
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	6.3	0.8494
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	7.5	0.8633
AT4G24840			unknown protein		Lus10009908 [exp]	8.5	0.8651
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10014927 [exp]	9.9	0.8387
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	12.0	0.8271
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	12.4	0.8566
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10021643 [exp]	15.5	0.8407

Compare expression of checked genes

Lus10011465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.