Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47330 1012 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02010 838 / 0 Protein kinase superfamily protein (.1) AT1G20920 425 / 9e-130 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G63120 415 / 5e-129 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 399 / 1e-124 DEA(D/H)-box RNA helicase family protein (.1) AT3G09620 383 / 5e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G20300 345 / 6e-102 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G56890 341 / 2e-97 Protein kinase superfamily protein (.1) AT5G14610 322 / 3e-95 DEAD box RNA helicase family protein (.1.2) AT3G01540 318 / 3e-94 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037527 [exp] 1324 / 0 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037526 [exp] 1137 / 0 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10035327 [exp] 415 / 2e-124 AT1G20920 993 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015627 [exp] 399 / 6e-124 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 397 / 2e-123 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 399 / 1e-122 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 398 / 3e-122 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10011917 [exp] 352 / 2e-104 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10022848 [exp] 349 / 3e-103 AT2G20300 912 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G194600 [exp] 1058 / 0 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G119100 [exp] 914 / 0 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 904 / 0 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.005G257400 [exp] 426 / 8e-127 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 402 / 2e-125 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G003600 [exp] 413 / 6e-122 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 391 / 6e-120 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 388 / 7e-119 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G254600 [exp] 357 / 1e-105 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 357 / 1e-105 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10011466 pacid=23182630 polypeptide=Lus10011466 locus=Lus10011466.g ID=Lus10011466.BGIv1.0 annot-version=v1.0 ATGTCCAAGAGAAAATTCGGATTCGAAGGATTCGGCATCAACCGTCAAACCAGCTACAACTTCGAGCGATCTCAAGCTCCACAGCGGCTCTACGTCCCAC CTTCATCTCGCCACAGCCATGACAACTACGAAGATACGGACATCGACAACATCGATTACGACGACACCAAGGAGACCACAAGCGATGGCGAGCCTGACAT CAGCAACAACAACAATAGCAACAGCAATACCGCTGGCGTTGAAGATGACGAAGTTGATCCACTGGACGCGTTCATGGAGGGGATACACGAAGAGATGAAA GCAGCGCCTCCGCCGAAGGCTAAGGATAAAGTGGACAAGTATCGGGATGACGAGGAGGATGATCCCATGGAGAGCTTCTTGAGTGCGAAGAAAGATATAG GGTTGACGTTGGCTGCCGATGCTCTCAACGCTGGATACAATTCCGACGAGGAGGTTTACGCAGCTGCAAAAGCTGTGGATGCTGGATTGCTGGATTATGA TTCGGATGATAATCCGGTGGTGGTTGATAAGAAGAAGATTGAGCCCCTTACCGCTTTAGACCATAGTTCCATTGATTATGAACCTTTCAACAAGGATTTT TACGATGAAAAGGAGTCCATAGCAGGGATGAGCGGGCAGGATGTGGCTGAGTACAGGAACACTCTAGCTATTCGTGTTTCGGGCTTTGATGTTCCGAGGC CAGTTAAAACGTTTGAAGATTGTGGATTTTCTACACAACTGATGGGTGCTATTGCTAAACAAGGTTATGAAAAGCCTACCCCCATACAATGTCAAGCTTT GCCTATTGTGCTCTCTGGCAGAGACATCATTGGTATAGCAAAAACAGGCTCTGGTAAGACTGCTGCTTTTATACTTCCCATGATTGTACATATCATGGAC CAACCTGAACTTCAGAAAGAAGAAGGGCCAATTGGAGTTATTTGTGCACCTACTAGGGAGTTAGCTCATCAAATATACTTGGAGGCAAAGAAATTTGCTA AACCGTATGGGATACGGGTCTCTGCTGTCTATGGTGGAATGTCGAAGCTTGAGCAGTTTAAAGAACTCAAAGCTGGTTGTGAAATGGTTGTTGCTACTCC TGGTAGATTGATTGACATGATAAAAATGAAAGCAGTGAATATGTTGAGAGCAACTTGCTTGGTACTTGATGAGGCAGATAGGATGTTTGACCTAGGGTTT GAGCCTCAAATAAGGTCTATTGTTGGACAGATTAGGCCAGATCGGCAGACTCTACTCTTCTCGGCTACCATGCCGTTCAAAATTGAGAAGTTAGCCAGAG AGATTCTTTCTGATCCCGTTAGAGTCATCGTAGGAGAGGTGGGTATGGCCAATGAAGATATTACTCAAGTAGTCCAAGTGATTCCCTCTGATGCAGAGAA GCTTCCCTGGCTTCTCGAAAAGCTACCCCCTATGATTGATGATGGAGATGTTCTAGTTTTTGCTTCGAAAAAGGCCACTGTTGATGAGATTGAATCACAG TTGGTCAAGAAGGAGTTCAAAGTTGCAGCTCTTCATGGCGACAAAGATCAGTCTTCAAGAATGGAGATCTTGCAGAAATTCAAATCTGGGGTCTACCATG TTCTTATTGCAACTGATGTTGCTGCTCGTGGATTAGATATTAAATCAATCAAGTCGGTTGTGAACTTTGACGTTGCAAAAGATATGGACATGCATGTTCA TCGTATTGGCAGGACTGGTCGTGCTGGCAATAAAGATGGGATTGCTTATACTCTTATAACCCAGAAGGAGGCACGGTTTGCTGGGGAACTGGTTAACAAT CTGGTTGCTGCTGGTCAAAATGTCTCAGCAGAACTCATGGATCTTGCTATGAAGGATGGAAGATTCAGGTCGAAACGTGACGCAAGAAAAGGAGGTGGTA AGAAAGGCAAAGGCAGGGGTGGGAGTGGTCGAGGAGTTCGTGGCGTGGATTTCGGTCTTGGCATCGGCTACAATTCTGAAACCACCGGCACCTCATCTCA CGACAATAGACCCAGTAAATCTGCAGGTTTCAGTTCAGTCCGGACAGGGATGACGGGACAGTTCAAGAACAACTTTGTTTCTGCTTCGTCAAATTCTCAG TCTGCTGGATTTAGTAACAACGGCTCGAGTGCTGCTCCTCCCAGCAAAAGGCCAGCATTACGTGGATTCGTGTCCGGCGGTTCAATAGGAGGCGATGCAA ATAGAGTCCAGCCGACTACCAATACACTATCTGGGTTCGTCTCAGCCGGCTCAATAACTGGAGATGCAAACAGAACATCTCAGAACCCCTCCGGAAATTC CAACCAGAAAACACCAGAGAGAGCCGCTCTCAACTTGTTGGCTAGCTTAGGTGTGGTTCAAAGTCTTATTTGTCCTACTGTTGACACTGTGAGGGGTGGG AGTCGGTCGGCCGTTCCGCAGGGCGAGAAAGGCGGAGACGCTCCGGTTGGGACCGTTGAGGACAATGTTAAGAACATCAAAACACAGGGTAGCCGATCTG CACGAAGCCTCGCATGGACCGACCGGAAGTCTACGTCGTCGGTGTTGTCACTAAGGTGGACGGGTAGAGTCATTCAACTCACATGCAGCTCGAAGCTCGG ATTCTGTGGCTCAGTCGACCGTGATGCCAGTCTGTTGGGTTCCTTCAAGCCAGTTGCGCCGATTGAAGAGTTGGTGATCCCCGCTTGTGGTGTGAATCCG CGAGGAGCAACTAATAATATCACAGGCTGTTGGGCAAGGTTGACAATTAGGGCAGCTGTTGAGAGCAAAACCGGCAACTATACTCGCAATATTAATTGCG TCGCAGGACCACCGAGAAGGCTGTGGTATTTATGGAGGATTCTATTTGTAATCTTCGGCTCAGTGATTCTCATCACTGATACAGTTGATTCAGCTGGCGT TAGTGTGGCAGAGCATCATAAATCTCACAGGAAGCATTTCTCGCCTCTTGGTTCACCGGCATTTGTGGTTGCTCCAGCTCAGCCTCCTGACTATGATCCA TTGATAACTTCTGGTCACCCACCAACGAGTTCGAGCTTGTCGAAGCCTTCGATGAAGAAGACACCGGGTGTTGGGTTGGTTGCTCTTGCCCCAACGCAGC CCCGTGCTAGCGACAACAATTCGGGCCTAGCTCAGCCTCCTTTGTCTCCAGATGTCTCTGATTGTTGTGGACCAGAGCTAGTGGTGAAGAGAGGGGTTCA TGGCTGTCATTGTGTGTATCCTATAAAGCTTGACCTTCTGCTGTCGAATGTTTCCCAAAATCATAATTGGGATTTGTTCCTTCAGGAGTTAGCTTCTGAG CTGGGTTTGTTGGTTTCTCAAATTGAGCTGAGAAACTTCTATTTTCTCACCCTATCGAGATTAAACATTTCGATGGATATTATTCCTCACTCCGGTGACA GCTTTCCTGCCAGTGATGCATACAAAATAAACTCTTCCCTTTCCTTGCATCAAGTCCGCTTCGACCCTAACTTTGTTGGTGACTACAAACTTCTTAATCT TACATGGTTTGAACCGCCACCGCCTAGCCCAGCTCCTGTTGCCATTTCATCACCTCCTCAAGCACCATCGCATCCTTTGTCAAATTCTACATCAGCAAGC ATTCCAAACAGAAGCAAGCATTCATATACACTTTTAGTACTCATTTTTGTGGGCATTGCAGTCGTGATTGTAACCATTATATGTACGCTTGTGGTTTGCT CCCGCTTGTCACGCAGAAGGAGAACTGAACCACCATCTGAAGAACCTGAGAAGCCGAGGCCTACATATGCAGTTCCTGTTGCAGGACCCATGCCACATCC TTCAAGTACACGTTTCCTATCTTATGAAGAACTCAGGGAAGCAACCGGTAACTTCTCGACTGCTAGCATACTTGGAGAAGGTGGGTTTGGTAAGGTTTTC AAAGGTGTCCTTAGTGACGGTACAGCTGTTGCGATCAAGAGGCTCACCTGTGGAGGCCAACAAGGGGATAAAGAGTTCTTAGTTGAGGTTGATATGTTGA GTAGATTGCATCATCGCAATCTTGTCAAACTCGTTGGCTACTATAGTAGTCGTGAAACTTCACAGAACCTCCTTTGTTATGAGCTTGTTCCCAATGGAAG CTTAGAGGAGTGGCTCCATGGTCCTCTAGGTGCTAATTCTCCTCTTCTTTGGGACACCAGAATGAAGATCGCTTTGGATGCCGCGAGAGGACTCGCTTAC CTACATGAGGACTCGCAGCCGAGTGTTATCCATAGGGATTTCAAGGCATCCAACATCCTTCTGGAGAACAATTTCCTTGCTAAAGTCGCGGATTTCGGAC TTGCGAAACAGGCACCAGAAGGCAGAGTGAACTATCTATCTACTCGAGTGATGGGAACATTCGGATATGTTGCGCCCGAGTATGCCATGACCGGACATTT ACTGGTGAAGAGTGATGTATATAGCTATGGAGTTGTGCTGCTCGAGTTGCTTACTGGGAGGAAGCCTGTGGATATGTCGCAACCATCTGGACAGGAGAAC CTTGTTACTTGGACAAGACCCATTCTCAGAGACAAGGACAGGCTAGAGGAGCTCGCGGATCCGAGGCTAGTCGGGAAGTACCCGAAGGAAGACTTCGTGC GAGTCTGCACCATAGCAGCAGCCTGCGTAGCCCCTGAGGCAAGCCAGCGGCCCACCATGGGAGAAGTGGTGCAGTCGCTGAAAATGGTGCAGCGGGTGAC CGAGTACCAAGACGCTGCTGCTGCGGCAGCTGCTGCATCGAGTGCCAGGCCGAACACGAGACAGTCGTGCACCACCTTCGACTCGGACGGGACATCATCG ATGTTCTCGTCGGGTCCTTTCTCCGGGTTGAGCAACTTCGACAACGAGCGGACTGCAGCCTTCTCGGAGGATCTCCACGAAGGAAGGTGA
AA sequence Show only first row Show all	>Lus10011466 pacid=23182630 polypeptide=Lus10011466 locus=Lus10011466.g ID=Lus10011466.BGIv1.0 annot-version=v1.0 MSKRKFGFEGFGINRQTSYNFERSQAPQRLYVPPSSRHSHDNYEDTDIDNIDYDDTKETTSDGEPDISNNNNSNSNTAGVEDDEVDPLDAFMEGIHEEMK AAPPPKAKDKVDKYRDDEEDDPMESFLSAKKDIGLTLAADALNAGYNSDEEVYAAAKAVDAGLLDYDSDDNPVVVDKKKIEPLTALDHSSIDYEPFNKDF YDEKESIAGMSGQDVAEYRNTLAIRVSGFDVPRPVKTFEDCGFSTQLMGAIAKQGYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFILPMIVHIMD QPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYGIRVSAVYGGMSKLEQFKELKAGCEMVVATPGRLIDMIKMKAVNMLRATCLVLDEADRMFDLGF EPQIRSIVGQIRPDRQTLLFSATMPFKIEKLAREILSDPVRVIVGEVGMANEDITQVVQVIPSDAEKLPWLLEKLPPMIDDGDVLVFASKKATVDEIESQ LVKKEFKVAALHGDKDQSSRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDVAKDMDMHVHRIGRTGRAGNKDGIAYTLITQKEARFAGELVNN LVAAGQNVSAELMDLAMKDGRFRSKRDARKGGGKKGKGRGGSGRGVRGVDFGLGIGYNSETTGTSSHDNRPSKSAGFSSVRTGMTGQFKNNFVSASSNSQ SAGFSNNGSSAAPPSKRPALRGFVSGGSIGGDANRVQPTTNTLSGFVSAGSITGDANRTSQNPSGNSNQKTPERAALNLLASLGVVQSLICPTVDTVRGG SRSAVPQGEKGGDAPVGTVEDNVKNIKTQGSRSARSLAWTDRKSTSSVLSLRWTGRVIQLTCSSKLGFCGSVDRDASLLGSFKPVAPIEELVIPACGVNP RGATNNITGCWARLTIRAAVESKTGNYTRNINCVAGPPRRLWYLWRILFVIFGSVILITDTVDSAGVSVAEHHKSHRKHFSPLGSPAFVVAPAQPPDYDP LITSGHPPTSSSLSKPSMKKTPGVGLVALAPTQPRASDNNSGLAQPPLSPDVSDCCGPELVVKRGVHGCHCVYPIKLDLLLSNVSQNHNWDLFLQELASE LGLLVSQIELRNFYFLTLSRLNISMDIIPHSGDSFPASDAYKINSSLSLHQVRFDPNFVGDYKLLNLTWFEPPPPSPAPVAISSPPQAPSHPLSNSTSAS IPNRSKHSYTLLVLIFVGIAVVIVTIICTLVVCSRLSRRRRTEPPSEEPEKPRPTYAVPVAGPMPHPSSTRFLSYEELREATGNFSTASILGEGGFGKVF KGVLSDGTAVAIKRLTCGGQQGDKEFLVEVDMLSRLHHRNLVKLVGYYSSRETSQNLLCYELVPNGSLEEWLHGPLGANSPLLWDTRMKIALDAARGLAY LHEDSQPSVIHRDFKASNILLENNFLAKVADFGLAKQAPEGRVNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQEN LVTWTRPILRDKDRLEELADPRLVGKYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRVTEYQDAAAAAAAASSARPNTRQSCTTFDSDGTSS MFSSGPFSGLSNFDNERTAAFSEDLHEGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	0	1
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	2.0	0.9279
AT5G22780			Adaptor protein complex AP-2, ...		Lus10020522 [exp]	2.4	0.9246
AT4G16100			Protein of unknown function (D...		Lus10016842 [exp]	4.9	0.8690
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	5.2	0.9166
AT3G45190			SIT4 phosphatase-associated fa...		Lus10016088 [exp]	6.9	0.9160
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Lus10011192 [exp]	6.9	0.8502
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	9.7	0.9155
AT3G15160			unknown protein		Lus10040027 [exp]	10.6	0.8587
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	12.2	0.8862
AT2G21630			Sec23/Sec24 protein transport ...		Lus10043359 [exp]	13.0	0.8633

Compare expression of checked genes

Lus10011466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.