Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52360 1468 / 0 Coatomer, beta' subunit (.1.2) AT1G79990 1454 / 0 structural molecules (.1.2.3.4.5) AT3G15980 1453 / 0 Coatomer, beta' subunit (.1.2.3.4.5) AT2G21390 209 / 2e-55 Coatomer, alpha subunit (.1) AT1G62020 206 / 1e-54 Coatomer, alpha subunit (.1) AT3G49660 108 / 2e-25 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 95 / 1e-19 TAF5 TBP-associated factor 5 (.1) AT5G23430 92 / 1e-18 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 91 / 2e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 91 / 2e-18 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033092 [exp] 1317 / 0 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037524 [exp] 1234 / 0 AT1G52360 1077 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037525 [exp] 426 / 5e-142 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2) Lus10026094 [exp] 335 / 1e-107 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10002324 [exp] 325 / 3e-103 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10037538 [exp] 205 / 5e-55 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10011454 [exp] 206 / 2e-54 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10025780 [exp] 206 / 2e-54 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 204 / 1e-53 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056300 [exp] 1535 / 0 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 1526 / 0 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.006G250200 [exp] 369 / 2e-119 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.012G074800 [exp] 206 / 2e-54 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 205 / 5e-54 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.007G009500 [exp] 96 / 3e-21 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 99 / 6e-21 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.010G255400 [exp] 97 / 3e-20 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 92 / 9e-20 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 91 / 1e-19 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] Beta_propeller PF04053 [flax] [poplar] Coatomer_WDAD Coatomer WD associated region
Representative CDS sequence Show only first row Show all	>Lus10011467 pacid=23182650 polypeptide=Lus10011467 locus=Lus10011467.g ID=Lus10011467.BGIv1.0 annot-version=v1.0 ATGAGTTTTGGAGGTCGAGATCTGGGGAACCTCTCAGACTGGAAATCAAGGTACCGTGTTACAGATTATCTAAAGTTTGTTTCGTTTGCCGGCTGGATCC GGAACTACATAATGTCTTTATTGTTGCTGACTGTACTTGTACGGTTGATAGAGGAAACTTGCTCAAAGATCGGAGAGAGTGAAGTCTGCGGATCTTCATC CTACAGAGCCATGGATCTTAGTGAGTTTGTATTCAGGGACTGTGTGTATCTGGAACTACCAGTCACAGTTAGGTCAGCCAAGTTCGTGCCAAGAAAGCAA TGGGTTGTTGCTGGAGCTGACGACATGTTTATTCGGGTGTACAATTATAACACAATGGACAAGGTCAAAGTCTTTGAGGCACATACAGATTATATTAGGT GTGTGGCTGTGCATCCCACCCTTCCATATGTCTTGTCATCATCTGATGATATGCTCATAAAACTATGGGACTGGGAGAAAGGCTGGTTGTGCACTCAGAT ATTTGAGGGACATTCCCATTATGTAATGCAAGTGACCTTTAACCCTAAAGACACAAACACGTTTGCCAGTGCATCTCTTGATCGAACCATAAAGATTTGG AATCTTGGATCTCCAGACCCAAACTTTACCCTGGATGCTCATCAGAAAGGGGTAAACTGCGTTGATTACTTCACAGGTGGTGATAAACCTTATCTGATCA CTGGCTCTGATGATCACACTGCTAAGGTGTGGGACTATCAAACCAAAAGTTGTGTCCAGACTTTGGAAGGGCACACCCATAATGTCTCTGCTGTATGTTT CCACCCTGAACTGCCTATAATCATCACAGGTTCTGAGGATGGTACCGCCCGCATATGGCATTCTACAACCTATAGATTGGAGAACACATTGAATTATGGT CTTGAAAGAGTTTGGGCTATTGGCTACATTAAAGGTTCACGAAGGATTGTAATTGGTTATGATGAGGGAACCATTATGGTCAAAATTGGTCGAGAAGAAC CTGTGGCCAGTATGGACAATAGTGGAAAGATAATTTGGGCCAAGCACAATGAAATTCAGACTGTAAATATTAAGAGTGTGGGAGCTGATTTTGAGGTCAC TGATGGAGAGCGATTACCTCTGGCAGTCAAGGAGTTGGGAACATGTGATCTGTACCCACAAAGCTTAAAGCACAATCCCAATGGAAGATTTGTTGTTGTT TGTGGAGATGGCGAGTACATTATATATACAGCCTTAGCATGGAGAAACAGATCGTTTGGTTCTGCCTTGGAATTTGTTTGGTCATCAGAAGGAGAATATG CTGTAAGAGAAAGTACATCAAAGATTAAGATCTTCAGCAAAAATTTCCAGGAAAAGAAGAGCATCAGACCAACCTTTTCGGCCGATCGAATTTTTGGAGG GACACTATTAGCTATGTGCGGAAATGATTTCATTTGTTTCTATGACTGGGCTGAATGCAGGCTAATCAGGAGAATCGATGTCACTGTTAAAAATCTTTAT TGGGCTGACAGTGGTGATCTAGTTACAGTTGCAAGTGACACTTCATTTTACATCCTGAAATACAATCGTGATGTAGTTTCATCCTATTTAGAAAGCGGAA GAGCTGTGGATGAGGAAGGTGTTGAAGAAGCTTTTGAACTTCTCCATGAAACCAACGAGCGTGTACGTACTGGATTGTGGGTGGGCGATTGTTTCATCTA CAATAACTCCTCATGGAGGCTTAATTATTGTGTTGGGGGAGAGGTAACCACCATGTATCATTTGGACCGCCCTATGTACTTGTTAGGGTATCTTGCTACT CAAAGTCGTGTGTATCTGATTGACAAAGAATTCAATATTGTGGGTTACACTTTACTTCTCAGCTTGATTGAGTACAAGACTCTTGTTATGCGAGGCGACA TAGAAAGAGCCAATGAGATCTTACCATCGATTCCTAAAGAACAGTACAACAGTGTTGCACGCTTCTTGGAATCCCGTGGTATGGTGGAGAATGCTATCGA TGTAGCTACTGACCCTAATTACAGATTTGAGCTAGCCATACAACTTGGTAGATTAGAGGTTGCAAAGGAAATTGCTGCTGAGGTGCAGAGTGAGTTGAAG TGGAAGCAGTTGGGAGAATTGGCCATGTCTAATGGAAAGTTGGAGATGGCTGAAGAGTGCATGAATCGTGCAATGGACTTGAGTGGACTATTGCTGCTCT ATTCTTCTCTTGGAGACGCTGACGGCATTTCGAAACTTGCATCCCTAGCAAAGGAGCAGGGAAAAAAGAATGTTGCTTTCTTGTGCTTGTTCATGTTGGG TAAATTAGAAGATAACCGGATACCAGAGGCTGCTTTAATGGCTCGCTCTTATCTTCCGAGCAAGGTTTCAGAGATTGTTGCTATTTGGAGAAAAGATCTC AGCAAAGTCAACCCAAAAGCTGCAGAATCCTTGGCAGATCCGGAGGAGTATCCAAATATGTTCGAGGATTGGCAAGTTGCTTTGTCTGTTGAATCGAAAT TTGGCGACATTCGCGGTGTTTACGCTCCAGCAGAAGACTACATAAACCATGCTGATAAGCCTCACTTAACACTTGTGGAGGCCTTTAGAAACATGCATAT CGAGGAGGAGTCTCTCGAGAATGGAGACTATGAGCAGGAGGAGGCCGTCGAAGAGCAGAGCGGAGAAGAACAGAACGCCGAGGAGCAAACTGGAGAAGGA AGCCAAGAAGAAGCGATTGTGGTCGATGCTGATTCCAACGATGGTGGAGTACTTGTCAACGGGAATGAGGCCGAGGAACAGTGGGGTATGAATAATGAAG GAAACCACCCATCAGCCTAA
AA sequence Show only first row Show all	>Lus10011467 pacid=23182650 polypeptide=Lus10011467 locus=Lus10011467.g ID=Lus10011467.BGIv1.0 annot-version=v1.0 MSFGGRDLGNLSDWKSRYRVTDYLKFVSFAGWIRNYIMSLLLLTVLVRLIEETCSKIGESEVCGSSSYRAMDLSEFVFRDCVYLELPVTVRSAKFVPRKQ WVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTARIWHSTTYRLENTLNYG LERVWAIGYIKGSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADFEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVV CGDGEYIIYTALAWRNRSFGSALEFVWSSEGEYAVRESTSKIKIFSKNFQEKKSIRPTFSADRIFGGTLLAMCGNDFICFYDWAECRLIRRIDVTVKNLY WADSGDLVTVASDTSFYILKYNRDVVSSYLESGRAVDEEGVEEAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMYHLDRPMYLLGYLAT QSRVYLIDKEFNIVGYTLLLSLIEYKTLVMRGDIERANEILPSIPKEQYNSVARFLESRGMVENAIDVATDPNYRFELAIQLGRLEVAKEIAAEVQSELK WKQLGELAMSNGKLEMAEECMNRAMDLSGLLLLYSSLGDADGISKLASLAKEQGKKNVAFLCLFMLGKLEDNRIPEAALMARSYLPSKVSEIVAIWRKDL SKVNPKAAESLADPEEYPNMFEDWQVALSVESKFGDIRGVYAPAEDYINHADKPHLTLVEAFRNMHIEEESLENGDYEQEEAVEEQSGEEQNAEEQTGEG SQEEAIVVDADSNDGGVLVNGNEAEEQWGMNNEGNHPSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10011467 [exp]	0	1
AT1G50120			unknown protein		Lus10040977 [exp]	1.0	0.9505
AT5G16300			Vps51/Vps67 family (components...		Lus10041337 [exp]	1.4	0.9452
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	1.7	0.9433
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	3.7	0.9360
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023394 [exp]	3.9	0.9383
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038111 [exp]	5.5	0.9291
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004939 [exp]	5.7	0.8894
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	7.4	0.9273
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	7.5	0.9384
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031155 [exp]	7.5	0.9021

Compare expression of checked genes

Lus10011467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.