Plant FIBer expression Database

Lus10011468 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80000 233 / 9e-68 CASC3/Barentsz eIF4AIII binding (.1.2)
AT1G15280 168 / 1e-44 CASC3/Barentsz eIF4AIII binding (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037523
[exp]
875 / 0 AT1G52420 770 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G178900
[exp]
487 / 6e-164 AT1G80000 272 / 3e-82 CASC3/Barentsz eIF4AIII binding (.1.2)
Potri.003G056500
[exp]
451 / 3e-150 AT1G15280 152 / 4e-39 CASC3/Barentsz eIF4AIII binding (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09405 Btz CASC3/Barentsz eIF4AIII binding
Representative CDS sequence
>Lus10011468 pacid=23182587 polypeptide=Lus10011468 locus=Lus10011468.g ID=Lus10011468.BGIv1.0 annot-version=v1.0
ATGCCGAAGGTAGTGGGAGCAGAGGTCGACTATGATAGCGATCCGGAGGAGGAGAAGCGTCTGCTGGGAATGCGAAGGCGTGAGGCTGCCAGTGATGACG
AGGAAGGTGATGTGTTGGACAAGCAGCGGAAGGAGAAGAATCCAATGGATCGGAGGGCTCCACTGCTGTCTGATGAATCTGATGACCAAGGTGGGGCTGC
TGATTACGACTACGATGATGAAGAATCCCAATTAGATGAAGGAGCCGAGGAAGAGGAAGAAGAAGTCTATGACGATGAGGATGATGTAGTGGATGAGGAA
GAGGGAGTTTATGAGGATGAAGGGGAACAAAACACAATTGCGAAGAGAGGAGTAGGCGTAGGAGTTGGTGGAGTTGAGGGTGATGCCATAGATATAGAGG
GTAGAGAGTTGGAACCAGGATTGGAGGATGTTGGAGAGGCTGGGGATAATGTTGAGGGAGAGGAGGGGAAGAAGGAGAATGAACCTTTTGCTGTTCCAAC
TGCTGGGGCTTTTTACATGCATGATGATCGGTTCAGGGAGAGTACTGGTGGTCGAGGCGGGCGAACATTTGGTGGAAGGAAGCTATGGGAGTCCAAAGAT
GATAAGAAGTGGGGCCATGACAAATTTGAAGAACTGACATCGCATGAAAGGCATCATGACCAGGGAAGGAGGAATTCCAGAGGTAGTTTCCGAGGTCGTG
GTGGAAAAGGCCGCGGTCCAGAACAAGGCTATGGAAGAAGGAACAGATCTGGTGCATTCAGTAATGGTAACACTCAGAATCAGGCTCCTAAAGGTGTGAG
GGGGAGAGGCCCCAGAAAATATGAACCTAGCTGGAATAACAATAGCCAGGGACCTCCTCTACAAAGCAAGAAGCCTGTTGAAAATACCTCACATGATTCT
TCGCGGAGAGCAGCCACAGCTATGTCAAATTCAGAATCAGATCAATTGCCCCCTGCAAGAAAACTTTCGGGCTTAAATTCAGCTTCCCCTCCCTTTTATC
CCTCTGGGTCTTCAAGTAAAGATGCTGCTCAGTCACATAAAAATGATTTACAAGGTGGAAGCACAAGTAGGAGTGTCCGTAACTCTGTCGCAGAGGGAAG
CTTCAATGTTAAGCAGACTGGTTCATTAGGACGTGGGAAGAATGTGTCTGACACTGTTGGCATTGACAAGCTTTACATTGATGAACCCGCCACTTTAACT
TCAGGGAAGGGCTCGAACAATGTTCAAATGCTAACTGCTGGTTCTTCTATGATCAACCCATCACGGGCATCTCAACCCAGAGCTCAGGGAAGAGCTGGAC
CTGTTCCTGGACAGGCGGGTTACTTGCCAACTTCGCCTCACAACCAACTCAACAGAATCTCTCCTGCAGCTCAACATCATGTGGTTCAGCAGAGCGTTAT
CCAAGGTCGGGTTCAGTCCTCTGTTCAAGCTCCTAACCAGCAGTTGTCACAGCATTCTGGTGGAGGTTCTCGAGCTTCTTCTCCACCCAATTCAGCTATG
TCAGAGAATTCTTATGAACACGAAGCTGAAAGTACTTCGGAGTCTAGTAAATTGAGGAGTGCATTGGTTGGGAAGGCGAAAGGGAGTGGAACAGGTCAAT
TTCTGTATGGCGGGGCTCAAGTTGGTCCTGGTGATCAGAACTTCCCACCTGCATTCTTACCTGTTATGCAATTCGGAGGGCAGCATCCTGGTGGCATTGG
CGTTCCTGCTGTCGGCATGGCTTTCCCTGGATATGTTTCTCAATCCCAGCACGGTGTAGGAAACTCAGAAATGACATGGTTACCGGTTTTAACTGGTCCC
GCAGGAGGTTTAGGTGCCACATACTGTCCTCCTTATATTACTGTTGATGGTTCTTATCATTCTGGGCAGCCACCCTCTATGAGTTCTTCAAGCAATGAAA
CCGCCATAACCAACTCGAACAATGAATCGAGACCTTCACAAAGATCTGATGTTGTAGGTGATGAATACGGCCAACGTCAGAAGCCTCGCAGGCAAGTTGA
ATGA
AA sequence
>Lus10011468 pacid=23182587 polypeptide=Lus10011468 locus=Lus10011468.g ID=Lus10011468.BGIv1.0 annot-version=v1.0
MPKVVGAEVDYDSDPEEEKRLLGMRRREAASDDEEGDVLDKQRKEKNPMDRRAPLLSDESDDQGGAADYDYDDEESQLDEGAEEEEEEVYDDEDDVVDEE
EGVYEDEGEQNTIAKRGVGVGVGGVEGDAIDIEGRELEPGLEDVGEAGDNVEGEEGKKENEPFAVPTAGAFYMHDDRFRESTGGRGGRTFGGRKLWESKD
DKKWGHDKFEELTSHERHHDQGRRNSRGSFRGRGGKGRGPEQGYGRRNRSGAFSNGNTQNQAPKGVRGRGPRKYEPSWNNNSQGPPLQSKKPVENTSHDS
SRRAATAMSNSESDQLPPARKLSGLNSASPPFYPSGSSSKDAAQSHKNDLQGGSTSRSVRNSVAEGSFNVKQTGSLGRGKNVSDTVGIDKLYIDEPATLT
SGKGSNNVQMLTAGSSMINPSRASQPRAQGRAGPVPGQAGYLPTSPHNQLNRISPAAQHHVVQQSVIQGRVQSSVQAPNQQLSQHSGGGSRASSPPNSAM
SENSYEHEAESTSESSKLRSALVGKAKGSGTGQFLYGGAQVGPGDQNFPPAFLPVMQFGGQHPGGIGVPAVGMAFPGYVSQSQHGVGNSEMTWLPVLTGP
AGGLGATYCPPYITVDGSYHSGQPPSMSSSSNETAITNSNNESRPSQRSDVVGDEYGQRQKPRRQVE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G80000 CASC3/Barentsz eIF4AIII bindin... Lus10011468
[exp]
0 1
AT1G31430 Pentatricopeptide repeat (PPR-... Lus10002288
[exp]
1.0 0.8769
AT1G56290 CwfJ-like family protein (.1) Lus10022209
[exp]
3.7 0.8543
AT4G21300 Tetratricopeptide repeat (TPR)... Lus10008967
[exp]
4.9 0.8248
AT2G42500 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2... Lus10039185
[exp]
6.0 0.8297
AT5G04980 DNAse I-like superfamily prote... Lus10033398
[exp]
6.5 0.8173
AT2G29200 APUM1 pumilio 1 (.1) Lus10002708
[exp]
7.5 0.7883
AT5G18480 PGSIP6 plant glycogenin-like starch i... Lus10000817
[exp]
8.1 0.8189
AT1G73660 protein tyrosine kinase family... Lus10009062
[exp]
9.5 0.7925
AT5G42920 AtTHO5 THO complex, subunit 5 (.1.2) Lus10009754
[exp]
11.0 0.8217
AT1G17720 ATBBETA, ATB BE... Protein phosphatase 2A, regula... Lus10015635
[exp]
12.7 0.7727

Lus10011468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.