Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15940 704 / 0 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G52420 682 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G19710 143 / 1e-36 UDP-Glycosyltransferase superfamily protein (.1) AT1G75420 140 / 1e-35 UDP-Glycosyltransferase superfamily protein (.1) AT5G01220 54 / 3e-07 SQD2 sulfoquinovosyldiacylglycerol 2 (.1) AT3G10630 53 / 5e-07 UDP-Glycosyltransferase superfamily protein (.1) AT1G78800 47 / 3e-05 UDP-Glycosyltransferase superfamily protein (.1) AT4G10120 46 / 9e-05 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT4G02280 46 / 0.0001 ATSUS3, SUS3 sucrose synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037523 [exp] 1110 / 0 AT1G52420 770 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10024281 [exp] 140 / 2e-35 AT1G75420 689 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10028338 [exp] 139 / 2e-34 AT1G75420 642 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10041786 [exp] 137 / 4e-34 AT1G75420 647 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10002499 [exp] 51 / 3e-06 AT5G01220 721 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10004832 [exp] 50 / 4e-06 AT5G01220 629 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10037008 [exp] 47 / 4e-05 AT1G78800 665 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10015797 [exp] 45 / 0.0001 AT1G78800 652 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10002154 [exp] 43 / 0.0009 AT4G01210 1268 / 0.0 glycosyl transferase family 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G179000 [exp] 639 / 0 AT3G15940 794 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G031300 [exp] 147 / 4e-38 AT1G75420 644 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.005G118800 [exp] 146 / 2e-37 AT1G75420 654 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G112600 [exp] 53 / 5e-07 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.006G097600 [exp] 52 / 1e-06 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.002G202300 [exp] 47 / 3e-05 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.008G018200 [exp] 46 / 8e-05 AT3G10630 588 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G029100 [exp] 44 / 0.0003 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 44 / 0.0005 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10011469 pacid=23182658 polypeptide=Lus10011469 locus=Lus10011469.g ID=Lus10011469.BGIv1.0 annot-version=v1.0 ATGGAGGAAAGCATAATCAGACCGGATTTGCATGTGAATGTTACTAGGCAATCGCCATTGAGGCCAAATGGAAGAGCAACACCTAGAAACTCTCCTACAT ACAAGAGGTTGAACTCCAGCAGAACACCAAGGAGGGATGGGAGGAGCAGTGGAGGCAGACTGCAGTGGTTTCGGAGCAGTCGAATAGTGTACTGGCTGCT TTTGATTACTCTCTGGACTTACCTTGGGTTCTATGTCCAGTCTAGGTGGGCTCACGATAATAACAAGGAAGAGTTTCTCGGTTTCGGGGGTAGGAATGGA GTTGTACATTCTGAGATTAGTGAAGCCACTGTTCGTAGAGATTTGTTAGGTAATGAGACTTCACTAGCTGTAAATAACAAGATTGAGGTGGAAGATGGGA AACGGATAGAGGTAAGTTTGGCCAAGAAGGAAAATGAAGTTTCATCCAATCAGACTGTAGCTCCAAAGAAGAAGGATAAGAAACCAGTCCGCAGGCTACG ACGTAGAGCACGCGGTAGGAAGAAGGCGAAGATAGAGGATGAAAGCAATGAGCCAGAGGTGCAAGAGCTAGAGATTCCTAAACGGAATACTTCTTACGGT TTGCTTGTTGGTCCATTTGGTACAACCGAGGATCAAATCTTGGGATGGAGTCCCGAGAAGAGGACTGGAACCTGCGATAGAAAGGGCGCCTTTGCACGTC TTGTATGGTCAAGGAAGTTTGTTTTGATCTTCCACGAGCTATCCATGACTGGGGCTCCTCTTTCCATGTTGGAATTAGCAACAGAACTTTTGAGCTGCGG AGCCACTGTGTCAGTTGTAGTTCTCAGTAGAAAAGGTGGGTTGATGCCAGAACTTTCCAAGAGAAGGATCAAAGTACTTGATGACAGAGCAGATCTCAGC TTCAAAACTGCCATGAAGGCTGATATTGTCATTGCTGGTTCAGCGGTTTGTACTTCATGGATAGGATTAGTTGTTTCATTTGGTTACTTGTCTTTTCTTT TGGATGTGAACGCCAATGTTCATTCGTCTCCAGATCAATATATCACTCGCTTTCCAGCGGGGGGAAGTCAAATTGTATGGTGGATAATGGAAAACAGGAG GGAGTACTTCGATCGCTCGAAGATCGTCCTCGATAGAGTCAAAATGGTAGTCTTTCTCTCCGAATCCCAGTCCAGACAATGGCTAACTTGGTGCGAAGGG GAGAACATTAAACTCAGATCTCCACCAGCAGTGGTGGAACTTTCTGTCAACGACGAACTCGCTTTTGTAGCCGGAATTCCATGCTCACTAAACTCTCCAT CCTCCAGCCCAGAGGAGATGCTTGAGAAGAAGCAGTTACTCAGGAGTTCAGTTAGAAGAGAGATGGGACTGAATGACAACGATATGCTTGTAATGTCTCT CAGCAGCATCAACCCAGGCAAGGGGCAGCTGTTACTTCTTGAATCCGCAAAGATGTTGGCTGAACCCGAAGATTCCTTATCGAGCCTGGCCGATAAGCAT CATTTGAGATCTTTATTGCAAGGTCAACAACACCATACTGGTGTAGCGCGGAAATCAGTTCTCAAAGTTCTTGTGGGATCCGTGGGATCTAAGAGCAATA AGATACCTTATGTCAAGGAAATCCTGGAGTTCGTATCACAGCATTCGAACTTGTCAAAGTCTGTGCTATGGACTCCTTCGACGACTCGTGTGGCCTCTCT TTATTCTGCTGCAGATGTCTACGTCATAAATTCCCAGGGTATTGGAGAAACATTTGGAAGAGTTACCATTGAAGCAATGGCATTCGGTCTTCCGGTGGTG GGAACGGATGCGGGAGGGACGAAGGAGATAGTGGAGCAGAACGTAACGGGGCTGCTCCACCCGGTGGGGAGGCAAGGGAGCCGCGTGCTGGCGGATAATT TGAGATACCTGATGAAGAACGGGGAAGTGAGGAAGGAAATGGGGAAGAGAGGGAGGGAGAAAGTAGTGAGGAAGTACCTGAAGAAACATATGTACAGGAA ATTCGGCGAGCTGCTCTACAAGTGTATGCAGATCAAGTGA
AA sequence Show only first row Show all	>Lus10011469 pacid=23182658 polypeptide=Lus10011469 locus=Lus10011469.g ID=Lus10011469.BGIv1.0 annot-version=v1.0 MEESIIRPDLHVNVTRQSPLRPNGRATPRNSPTYKRLNSSRTPRRDGRSSGGRLQWFRSSRIVYWLLLITLWTYLGFYVQSRWAHDNNKEEFLGFGGRNG VVHSEISEATVRRDLLGNETSLAVNNKIEVEDGKRIEVSLAKKENEVSSNQTVAPKKKDKKPVRRLRRRARGRKKAKIEDESNEPEVQELEIPKRNTSYG LLVGPFGTTEDQILGWSPEKRTGTCDRKGAFARLVWSRKFVLIFHELSMTGAPLSMLELATELLSCGATVSVVVLSRKGGLMPELSKRRIKVLDDRADLS FKTAMKADIVIAGSAVCTSWIGLVVSFGYLSFLLDVNANVHSSPDQYITRFPAGGSQIVWWIMENRREYFDRSKIVLDRVKMVVFLSESQSRQWLTWCEG ENIKLRSPPAVVELSVNDELAFVAGIPCSLNSPSSSPEEMLEKKQLLRSSVRREMGLNDNDMLVMSLSSINPGKGQLLLLESAKMLAEPEDSLSSLADKH HLRSLLQGQQHHTGVARKSVLKVLVGSVGSKSNKIPYVKEILEFVSQHSNLSKSVLWTPSTTRVASLYSAADVYVINSQGIGETFGRVTIEAMAFGLPVV GTDAGGTKEIVEQNVTGLLHPVGRQGSRVLADNLRYLMKNGEVRKEMGKRGREKVVRKYLKKHMYRKFGELLYKCMQIK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52420			UDP-Glycosyltransferase superf...		Lus10011469 [exp]	0	1
AT3G27030			unknown protein		Lus10032030 [exp]	3.5	0.8122
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Lus10037514 [exp]	5.0	0.8583
AT5G04270			DHHC-type zinc finger family p...		Lus10038701 [exp]	7.9	0.7969
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10033179 [exp]	8.5	0.8008
AT1G69430			unknown protein		Lus10037135 [exp]	8.9	0.8236
AT1G75140			unknown protein		Lus10007163 [exp]	13.6	0.8066
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	17.9	0.7955
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	20.3	0.8161
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10026535 [exp]	21.8	0.7684
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10022433 [exp]	23.1	0.7570

Compare expression of checked genes

Lus10011469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.