Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15660 223 / 6e-63 CENP-C CENP-C HOMOLOGUE, centromere protein C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023105 [exp] 1201 / 0 AT1G15660 232 / 5e-66 CENP-C HOMOLOGUE, centromere protein C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056600 [exp] 463 / 2e-153 AT1G15660 230 / 2e-65 CENP-C HOMOLOGUE, centromere protein C (.1) Potri.001G178200 [exp] 411 / 6e-134 AT1G15660 125 / 2e-29 CENP-C HOMOLOGUE, centromere protein C (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011470 pacid=23182652 polypeptide=Lus10011470 locus=Lus10011470.g ID=Lus10011470.BGIv1.0 annot-version=v1.0 ATGTCGAATTTGGAGGATCCGCTTCAAGGATATGGCGGCCTCTCTCTCTTCACTCGCACATTTCCTTCCCTTCCCGACGATCCCCTCTCCTCTCACAATT TCCTCAAATCCCTGCCTGTGCAGAATCCGGAGAAGCTCGTAGAGCAGGCGAAGAGTATATTAAGTGACGTTTCCAAGCTTCCAACCCTGGATCCCGCGCC ATCTAAAGAGAACGGTGAAGTAGTTGGTGGTAATCCTATGGAGAATCCTCGAGAGAGAAGGCCAGGGCTAGGGCGTAAGCGTGCTCGGTTCTCTTTGCTT CCTGGTTCCAGTCAGCCTAGTGTTAGTTTGGAACGGAGTTTGGATTTTGATAAGCTGAAAGATCCGGAGGAATTCTTCAAGGCTTATGAAAGATTAGAAC ATGCCAAGAAGGAGATAGCCAAGCAGACAGGGAATATCCAAACTGGTATCAATCAGCCTGGTGCTCTAATGGCTTCACGTCCTCGTCGACCTGGAATTCC CGGGAGATCTAGGACTGCAAAATACAAACATCTATACCCTACAATGCAGATGGAAGAAAGTCCTGAAGCAGAGCTGCCCAATCCATCTACTGACGGGGTG CAACCAGAGGTGGCAGACAAAATTGGTACATCAGAAGAGCAACGTAAACCAGATAATGTATCTTCAGAAGAAGCAGAACTCGCTGGTGGTACAGTTGCAG AGGCTGAGGGTTCCACGAACAAACATTTGGATTTGGATGATTTGGGTGAGTTGCTTTCTCAAGAAGGCATTGATGAGGATGGTGTGGTGCGTTTGCTGGA GGACAGATTGCAGATCAAGCCGCTAAACATCAGTAAATTGAACCTCCCAGAGTTGCATCAGAAGATCGACTTGGAGCCTTCAAGAGGAAGGAAATTCGAC AAGCCTAGATATGCACTTTCGAATATTCATAATATCTTGAGAGAAACTGGGCGTAGAAGTCCTCTGATACTGAAAACAGCAGCAACTTCTGTTTTAAATT TCGGTTCTCCTACTCCACCAAAAAGCCCTTTTACTTTAGTCTCTTTACTGCAAAAGTTGAACTCACAATCAGACCCATTGAGCGATCCATTTGCTGTGCC TGACATTGATTCATTATCTGAAAGCAATACTTATCACAAGAGAGATGTCAGCAAGGATGGTGCTTCAAAAGAAGTTGATTCGCTCATCATTGATGAGGAT GCTGACGAAATTGGTGGTAGCAATTCTCCCGCGGTTGCAGATTTCACTATTCTAAAAGACAGATCGGTAGAGTGTGATAAGGCCACTATAAGTTCCGGTG GGGAGGATGGACCCAGCATGTTTTGTGCTGAGGTGGAAGGCAAGAACGACGCTGTACATGAGGAGGGAAATGAGAAATTGGAGGAGAGTGGTAAGGCCAC TATAAGTTCCAGTGGTGCGGCAAAGCAGCTGAAGGAGATGGAACCTGTGCATTCCGCACAGCCTAGTCTAAGTGACGAGGAAACTATTCCAACAGGTTGC AGTAATCAAAATGAACCTGATCCATGTAGCCCTAAGGTATCTGAACATTGTGAGATGGGTGGATTCTCAGAATTCCAGATCAGTGCTCCAGAAGAAGACC AAGTTAATCCTCCGGATAAGCACAATGAGAATATTACTCAGGAACCTTCAGCAGTCGGTGTAAAGGAGCCCAGTAAACGGAACACTCGCAAACGCACCGG ATGCATGAGTAAGTTGATGACTACGAAGCGAAGACGTACAGCAACCAAACCGAGCGTAGTAGACGAACGTTTCGACTCCAAGGACGCACCTCAACCAAAT GCTCCGGATGGTGAGGAAACAATTAAAGAATCTCCTGTGGCATCAGTTGACCAGCAAGCCAGACCGAAAAGACGACGGGTTAAGGGAAGGGAAAGCGAAG CATTGTCCCGAAGGAAAAGCCTTATAGATGCCGGTTCTTCATACGCAGCAGGTGGGGTGAGGCGAAGCACTAGGATTCGGTCTAGGCCTTTAGAGTACTG GAAAGGAGAGAGATTTCTGTATGGACGCATTCATGAAAGTTTGGCTACGGTGATCGGGATCAAGTACGAGACTCCAACGAAAGACCAAGCGAGACCACCC GGGTTGAAGGTGAAGTCGTATGTCTCGGATGAGTACAAGCATCTCGTGGAGCTAGCTGCATTGGATTGA
AA sequence Show only first row Show all	>Lus10011470 pacid=23182652 polypeptide=Lus10011470 locus=Lus10011470.g ID=Lus10011470.BGIv1.0 annot-version=v1.0 MSNLEDPLQGYGGLSLFTRTFPSLPDDPLSSHNFLKSLPVQNPEKLVEQAKSILSDVSKLPTLDPAPSKENGEVVGGNPMENPRERRPGLGRKRARFSLL PGSSQPSVSLERSLDFDKLKDPEEFFKAYERLEHAKKEIAKQTGNIQTGINQPGALMASRPRRPGIPGRSRTAKYKHLYPTMQMEESPEAELPNPSTDGV QPEVADKIGTSEEQRKPDNVSSEEAELAGGTVAEAEGSTNKHLDLDDLGELLSQEGIDEDGVVRLLEDRLQIKPLNISKLNLPELHQKIDLEPSRGRKFD KPRYALSNIHNILRETGRRSPLILKTAATSVLNFGSPTPPKSPFTLVSLLQKLNSQSDPLSDPFAVPDIDSLSESNTYHKRDVSKDGASKEVDSLIIDED ADEIGGSNSPAVADFTILKDRSVECDKATISSGGEDGPSMFCAEVEGKNDAVHEEGNEKLEESGKATISSSGAAKQLKEMEPVHSAQPSLSDEETIPTGC SNQNEPDPCSPKVSEHCEMGGFSEFQISAPEEDQVNPPDKHNENITQEPSAVGVKEPSKRNTRKRTGCMSKLMTTKRRRTATKPSVVDERFDSKDAPQPN APDGEETIKESPVASVDQQARPKRRRVKGRESEALSRRKSLIDAGSSYAAGGVRRSTRIRSRPLEYWKGERFLYGRIHESLATVIGIKYETPTKDQARPP GLKVKSYVSDEYKHLVELAALD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	0	1
AT4G31880			unknown protein		Lus10017121 [exp]	2.8	0.9198
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10022254 [exp]	3.0	0.9083
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10006511 [exp]	4.5	0.9065
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	5.5	0.9063
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10013321 [exp]	8.3	0.8575
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	8.7	0.8693
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10007721 [exp]	8.8	0.8792
AT5G62710			Leucine-rich repeat protein ki...		Lus10033104 [exp]	10.6	0.9095
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	11.2	0.8890
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10008218 [exp]	11.5	0.8484

Compare expression of checked genes

Lus10011470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.