Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40360 838 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G56130 50 / 2e-06 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT1G62020 48 / 3e-05 Coatomer, alpha subunit (.1) AT5G01770 47 / 5e-05 RAPTOR2, ATRAPTOR1A, RAPTOR1A RAPTOR2, HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT1G61210 47 / 7e-05 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G73720 46 / 8e-05 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT5G67320 46 / 0.0001 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G04140 46 / 0.0001 Transducin family protein / WD-40 repeat family protein (.1.2) AT3G16650 45 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1) AT2G21390 45 / 0.0002 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023107 [exp] 1170 / 0 AT2G40360 937 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027113 [exp] 53 / 4e-07 AT5G56130 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10042333 [exp] 50 / 3e-06 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10008356 [exp] 49 / 8e-06 AT5G56130 583 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035842 [exp] 49 / 2e-05 AT4G04940 1137 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10016481 [exp] 48 / 3e-05 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 48 / 3e-05 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10036625 [exp] 47 / 5e-05 AT4G04940 1396 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10024447 [exp] 47 / 5e-05 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G222500 [exp] 905 / 0 AT2G40360 959 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G009600 [exp] 877 / 0 AT2G40360 914 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 59 / 5e-09 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.013G116900 [exp] 54 / 3e-07 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.014G077800 [exp] 52 / 1e-06 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G078900 [exp] 50 / 7e-06 AT4G04940 1394 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G002300 [exp] 48 / 2e-05 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G074800 [exp] 48 / 3e-05 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 48 / 3e-05 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.011G045500 [exp] 48 / 3e-05 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF08145 [flax] [poplar] BOP1NT BOP1NT (NUC169) domain
Representative CDS sequence Show only first row Show all	>Lus10011471 pacid=23182594 polypeptide=Lus10011471 locus=Lus10011471.g ID=Lus10011471.BGIv1.0 annot-version=v1.0 ATGCTGGTTGAGATTGCAGCAGGAGTTTTGCCGCACATAATCGCCACCCGCCACTACCAAGTTCAACTTCTTCTTCCTCCCGAAACCCTATCTTCCTCTA CTCCAATGGGCGCAGCCTCTCCACCTCACACAGAGGACGACGACGTCTCCAAGCTCATGGCGGAAGCTAGTTCCAGCGATGATTTGAGCTATGTTGAAGA AGAAGAAGAAACAGATGATGATGATGGTATTGCAGTCAGTGGCTCTTCTGATGATGGAAGTGGAGACTTCTTCTCTGAATATGGTCAGGAATCTGGAGAA TCTAACTCTGAATACAGTGGTACGGATGGTGATGGGGCAGGAGATGGAGAAGAAAGTGGAGATGCTGACTCTGATGCTGAACGTAATCAAGCCGTTGAAG AGAGCGATTCTTCAGAGGATGAGGTGGCTCCTCGAAACACGATTGGAGATGTTCCTTTAGTTTGGTACAAGGATGAGCCACATATTGGATATGACATTAA AGGCAAGAAGCTAACCAAAAAAGAAAGACAAGACAAGCTTGATTCATATCTGGCTACGGTTGATGACTCTAAAACCTGGCGCACGATTTACGATGATTAC GATGATGAGTATGTCGAGGTGACAAAAGAAGAAGTTGGAATGATTCGTAAATTGATCAATGGAGAGGCACCACATGGAGATTTTGATCCATATGCGCCAT ATGTCGACTGGTTTAAATATAATGATGCGATACATCCATTGTCAAATGCACCAGAACCAAAGCGGAGGTTTATCCGTTCAAAGTGGGAAGCTAAAGTGGT TGTTAGATTGGTCAGGGCTATTCGTAAAGGATGGATTAAATTTGATAAGCCAATAGAAGAACCTCGTACCTACAACTTGTGGGAAGAAGATTCTGCTCCT GCAGAGAAGGCTGGACATTTGTTACATATACCTCCGCCGAAGCCAAAGCTACCAGGTCACGAGGAGTCGTACAATCCTTCCAAAGAGTTCATCCCATCGC AGGAAGAAATTACTGCTATCCAGGTGATGAATGAAGAGGACAGACCTAATTTTATACCTAAAAGTTATCCATCTATGAGAAGCATTCCAGCATATGAAGA TGCTGTTAAGGAACGTTTTGAGCGTTGTTTGGACTTATACTTGTGCCCTAGAGTCCGGAGGAAGCGAATTAATATAGATCCTCAGTCTTTGAAACCGAAG TTACCTAGTCGAAAGGATCTGAAGCCTTACCCATCCACGTGCTACATTGAGTATAAAGGTCACAAAGGTGCTGTTGTGTCGATTTCAACTGAAGCTTTAG GAGAATGGTTGGCCTCAGGTTCTGCTGATGGGACTGTACGAATATGGGATGTGGATTCTGGTAGATGTCTTAAAGTTTGGGAGTTCGATGAAGGCATCAA GTTTGTATCCTGGAATCCTGAACTTCCTATTTTGGCAGTCTCCACGGGTCAGGATGTGTATATACTAAACACAGGTCTAGGAAATGATGAGACACAAAAG AAAGTCGGGGAACTTCTGCATGTTGAGAAAGCTGAACTATCAGATGATTCGAAAAAACCAATAACTATCTGGAGTCAAGATGATAAATATGGAGGAATCA GGTTGAGACATTCAAAGACTGTCTCTTCAGTGGAATGGCATCGCAAAGGAGACTATTTTTCAACCATAATGCCGGCAGGCGACACGAAATCAGTTCAATT ACACCAGCTTTCTAAGAAGCTTACGGACAAGCTTCCATTCAAGTTGAAAGGACTTGCGGTGTCATCGGTTTTCCATCCTACACGTTCCGTATTCTTGGCC GCGACAAAGAAGTACATAAGGGTGTACGATCTGGTGAAAGGGAAATTGATTAAGAAGCTTGACCCTGGTCTCCGTGAAATCTCGTCCATGTCCATTCATC GTGGCGGTGATAATCTGATTGTTGGAAGCAGAGAGGGAAAGTTAGCTTGGTTTGACATGGACCTTTCCTCAAAACCTTACAAGGTTCTAAAGTGTCACAA CCGGAGCGACATCAACAATGTTACGTTCCATCGTTCATACCCGTTATTTGCTTCGGCTTCGGATGACTGCACTGCATACGTCTTCCATGGGATGGTGTAT TCTGATCTTAATCAGGATCCTTTAATTGTTCCGTTGGAGATTCTTCGTGGTCATAAAGCCACTGCTGGACGAGGAGTGATGGACTGCAAGTTCCACCCAC GGCAACCATGGTTGTTCACTGCTGGTGCGGATTCAGTGATCAAATTGTATTGCCATTATTGA
AA sequence Show only first row Show all	>Lus10011471 pacid=23182594 polypeptide=Lus10011471 locus=Lus10011471.g ID=Lus10011471.BGIv1.0 annot-version=v1.0 MLVEIAAGVLPHIIATRHYQVQLLLPPETLSSSTPMGAASPPHTEDDDVSKLMAEASSSDDLSYVEEEEETDDDDGIAVSGSSDDGSGDFFSEYGQESGE SNSEYSGTDGDGAGDGEESGDADSDAERNQAVEESDSSEDEVAPRNTIGDVPLVWYKDEPHIGYDIKGKKLTKKERQDKLDSYLATVDDSKTWRTIYDDY DDEYVEVTKEEVGMIRKLINGEAPHGDFDPYAPYVDWFKYNDAIHPLSNAPEPKRRFIRSKWEAKVVVRLVRAIRKGWIKFDKPIEEPRTYNLWEEDSAP AEKAGHLLHIPPPKPKLPGHEESYNPSKEFIPSQEEITAIQVMNEEDRPNFIPKSYPSMRSIPAYEDAVKERFERCLDLYLCPRVRRKRINIDPQSLKPK LPSRKDLKPYPSTCYIEYKGHKGAVVSISTEALGEWLASGSADGTVRIWDVDSGRCLKVWEFDEGIKFVSWNPELPILAVSTGQDVYILNTGLGNDETQK KVGELLHVEKAELSDDSKKPITIWSQDDKYGGIRLRHSKTVSSVEWHRKGDYFSTIMPAGDTKSVQLHQLSKKLTDKLPFKLKGLAVSSVFHPTRSVFLA ATKKYIRVYDLVKGKLIKKLDPGLREISSMSIHRGGDNLIVGSREGKLAWFDMDLSSKPYKVLKCHNRSDINNVTFHRSYPLFASASDDCTAYVFHGMVY SDLNQDPLIVPLEILRGHKATAGRGVMDCKFHPRQPWLFTAGADSVIKLYCHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40360			Transducin/WD40 repeat-like su...		Lus10011471 [exp]	0	1
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	2.8	0.9595
AT1G31660			unknown protein		Lus10032891 [exp]	3.5	0.9490
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	3.7	0.9404
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	5.1	0.9500
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	5.3	0.9488
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	5.5	0.9415
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008664 [exp]	6.7	0.9424
AT1G06720			P-loop containing nucleoside t...		Lus10007980 [exp]	6.9	0.9351
AT1G30240			unknown protein		Lus10014364 [exp]	8.7	0.9245
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	9.4	0.9351

Compare expression of checked genes

Lus10011471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.