Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02190 263 / 3e-83 Fatty acid hydroxylase superfamily (.1.2) AT1G02205 262 / 7e-83 CER1 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) AT2G37700 249 / 2e-79 Fatty acid hydroxylase superfamily (.1.2) AT5G57800 126 / 2e-32 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011473 [exp] 424 / 1e-150 AT1G02205 310 / 7e-102 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10023110 [exp] 370 / 1e-127 AT1G02205 261 / 6e-81 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10019510 [exp] 284 / 2e-91 AT1G02205 763 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10023109 [exp] 115 / 2e-32 AT1G02205 87 / 3e-21 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10015499 [exp] 120 / 3e-30 AT5G57800 877 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10023210 [exp] 120 / 3e-30 AT5G57800 882 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10008895 [exp] 119 / 5e-30 AT5G57800 885 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10019971 [exp] 116 / 5e-29 AT5G57800 879 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G180300 [exp] 269 / 1e-85 AT1G02205 793 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152301 [exp] 261 / 8e-83 AT1G02205 790 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152600 [exp] 261 / 1e-82 AT1G02205 788 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152900 [exp] 259 / 8e-82 AT1G02205 789 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.006G177500 [exp] 146 / 2e-39 AT5G57800 890 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Potri.018G099400 [exp] 136 / 5e-36 AT5G57800 851 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10011472 pacid=23182598 polypeptide=Lus10011472 locus=Lus10011472.g ID=Lus10011472.BGIv1.0 annot-version=v1.0 ATGGCATCAAACCCAGGAATTCTCACACATTGGCCATGGCAATCTCTAGGCTCCTTCAAGTACTTGATTCTGGCTCCATGGGTAGCTCGCAGCACTTTCA ACTACTTGGGTGGTGGTGGCTCAAACGCAAAGGAAACAACCAGATTCCTTATCTTCCCATTCATCCTCTTCAGGATCCTTCACAACAACATTTGGATCGA TATCTCCCGCCGGAAAACTGCTACTCCGGCCAACAGGATCGTCGATAAGCCCATCGATGTCCACCAGCTCCGCAGAGAAAGTAACTGGGACGACCAAATC GTGATGACTGGCCTAATAATGTACGTGGCGACGATGGTGTTGGAAGAACGAACGTCGAATTTGCAAATATGGAGGACAGACGGCATCGTATGGACCATCT TGCTACATGTCGGACCAGTTGAGTTTCTATATTATTGGCTTCACAGAGCTTTGCACCACCATTTCCTCTACTCTCGATATCACTCGCACCACCATTCCTC CATCGTTACTCAGCCCATCACTGCTGTGATCCATCCATTTGTGGAAACAATGGCGTACATAGCGTTGTTTGGGATCCCAACGATGACAGTGCTTCTCACC GGAACCGGATCGTACGCTGCCATCTTCGGTTACATCTTCTTCCTCGATTTCATGAACAACATGGGCCACTGCAACTTCCGATCTCCCTTCGACTATTTCG ACGAAGAATCGACGGCTAGAAGCTCCTTCTTCTCTGCTCCTCTCAAGCTCCTTCTCTACACCCCTTCATACCACTCAGTGCATCACACAAAGTTCCAGAA AAACTACAGTCTTTTCATGCCGTTTTACGATTACATTTATGAAACGATGGAGATCAGTAGTCATCATGAGGAGAACAAGGACAATATTGGACCGCAGTTG AAATAA
AA sequence Show only first row Show all	>Lus10011472 pacid=23182598 polypeptide=Lus10011472 locus=Lus10011472.g ID=Lus10011472.BGIv1.0 annot-version=v1.0 MASNPGILTHWPWQSLGSFKYLILAPWVARSTFNYLGGGGSNAKETTRFLIFPFILFRILHNNIWIDISRRKTATPANRIVDKPIDVHQLRRESNWDDQI VMTGLIMYVATMVLEERTSNLQIWRTDGIVWTILLHVGPVEFLYYWLHRALHHHFLYSRYHSHHHSSIVTQPITAVIHPFVETMAYIALFGIPTMTVLLT GTGSYAAIFGYIFFLDFMNNMGHCNFRSPFDYFDEESTARSSFFSAPLKLLLYTPSYHSVHHTKFQKNYSLFMPFYDYIYETMEISSHHEENKDNIGPQL K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011472 [exp]	0	1
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Lus10005451 [exp]	1.0	0.9945
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10007208 [exp]	2.0	0.9559
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10001066 [exp]	4.0	0.8949
AT1G68780			RNI-like superfamily protein (...		Lus10038948 [exp]	4.2	0.8785
					Lus10012394 [exp]	6.0	0.9530
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	7.2	0.9514
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	8.1	0.9514
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	8.8	0.9514
					Lus10033149 [exp]	9.5	0.9514
					Lus10010102 [exp]	10.0	0.8760

Compare expression of checked genes

Lus10011472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.