Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80400 410 / 1e-141 RING/U-box superfamily protein (.1) AT4G32600 369 / 1e-124 RING/U-box superfamily protein (.1) AT4G26580 160 / 1e-45 RING/U-box superfamily protein (.1.2) AT5G55970 160 / 1e-45 RING/U-box superfamily protein (.1.2) AT3G61180 135 / 9e-36 RING/U-box superfamily protein (.1) AT1G12760 132 / 3e-35 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT4G11680 134 / 4e-35 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G68070 124 / 7e-32 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G63170 117 / 5e-29 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 110 / 8e-27 RIE1 RING-finger protein for embryogenesis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023112 [exp] 724 / 0 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1) Lus10013144 [exp] 386 / 4e-132 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10008106 [exp] 330 / 1e-110 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10033075 [exp] 203 / 5e-62 AT4G32600 189 / 2e-56 RING/U-box superfamily protein (.1) Lus10017750 [exp] 199 / 1e-60 AT4G32600 192 / 1e-57 RING/U-box superfamily protein (.1) Lus10022567 [exp] 167 / 7e-48 AT5G55970 418 / 1e-146 RING/U-box superfamily protein (.1.2) Lus10041359 [exp] 130 / 1e-33 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 123 / 3e-31 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10034587 [exp] 121 / 9e-30 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247000 [exp] 420 / 3e-145 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 414 / 8e-143 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 175 / 6e-51 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 171 / 1e-49 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.014G075000 [exp] 137 / 2e-36 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.002G155200 [exp] 136 / 4e-36 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.003G123300 [exp] 123 / 4e-31 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.008G134900 [exp] 121 / 5e-31 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G106300 [exp] 115 / 1e-28 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G072700 [exp] 74 / 2e-14 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10011475 pacid=23182642 polypeptide=Lus10011475 locus=Lus10011475.g ID=Lus10011475.BGIv1.0 annot-version=v1.0 ATGGATGTGACCTCTTCTAATCTAATTTGCATCGCTCAAACCGATCATTCCCCTTTGCTGATGGAGCGTATCGAAATGCATCATGGCCACGAGCATATAA TCGACATGAACAGGAACAATGATGCTTCTTCACCCAGCTCATACCACGATCACGATGATGATCTTCTTTATACCGAAGAACCACCTTCAAGTGCTGGAAC GGCCACTCGCCAGACTTCTTCAACCATGACAAGTAGATTAAACTCTAGGAATTCGACGTCGTTTTCGAGGAGGGGCGATTCGTACGGTAGGCGTCGCAGG AGCCCTTTGAATTCCGGGTTGTGGATCTCGGTCGAGTTGCTCGTAACGGTGTGCCAGATTGTAGCTTCTGTTGTGGTATTGGCGCTCTCGAGAAACGAAC ACCCGAAAGCCCCGTTATTTGCCTGGGTTGTGGGTTATGCATCGGGATGCGTGGCGACACTTCCGATACTTTACTGGCGGTTTCGTACTCGAAACGAAGG TGTCCTGCAAGATCCTATGCAATCACGAGACGGCAGTTTGCAAACTGGGATTCCTGATTCTGCACCGTATACTGCCATCTCTATTAATCACGAGGAGACC ATGGGAACTCCTACCAGGGCTGATCAACCGGCAGGGAATCTAAATGAAAGAATCAGTGGCGTAATGGATCATCTCAAGATGGGTTTGGATTGCTTCTTTG CAGTGTGGTTTGTTGTAGGCAATGTGTGGATTTTTGGAGGTCATGCCAGTCCAGACGATGCACCGAAATTGTACAAATTGTGTATAGTTTTCCTTACTTT TAGCTGTATAGGCTATGCAATGCCGTTTATTTTATGTGCAACAATCTGCTGTTGCTTGCCTTGCATTATCTCTCTCCTCGGGTTCCGAGAGGAGTTCTCC CAAACTAGAGGAGCCAGTGTTGAATGTATAAATAGTCTGCCGACGTACAAGTTCAAGTCAAAGGAAAGCGGCAGCTTCAGAGATCATGACGATGCCTCCG AAACGAGCGATGGCGGGATATTGGCTGCTGGGACCGAGAAGGAGCGTATGATATCTGGAGAAGATGCTGTGTGCTGCATTTGCTTAAACGAGTACGAAGA CGACGAGGAGTTGAGGGAGCTTCCGTGCGCGCATGTATTCCATGTAGAGTGCGTGGATAAGTGGCTCAAGATAAATGCATCATGCCCGCTTTGTAAAAAT GAGATATGTGAAAGTGGAGAAGATGCCTCTCCTCCATCTCCCACCAACCAACACTGA
AA sequence Show only first row Show all	>Lus10011475 pacid=23182642 polypeptide=Lus10011475 locus=Lus10011475.g ID=Lus10011475.BGIv1.0 annot-version=v1.0 MDVTSSNLICIAQTDHSPLLMERIEMHHGHEHIIDMNRNNDASSPSSYHDHDDDLLYTEEPPSSAGTATRQTSSTMTSRLNSRNSTSFSRRGDSYGRRRR SPLNSGLWISVELLVTVCQIVASVVVLALSRNEHPKAPLFAWVVGYASGCVATLPILYWRFRTRNEGVLQDPMQSRDGSLQTGIPDSAPYTAISINHEET MGTPTRADQPAGNLNERISGVMDHLKMGLDCFFAVWFVVGNVWIFGGHASPDDAPKLYKLCIVFLTFSCIGYAMPFILCATICCCLPCIISLLGFREEFS QTRGASVECINSLPTYKFKSKESGSFRDHDDASETSDGGILAAGTEKERMISGEDAVCCICLNEYEDDEELRELPCAHVFHVECVDKWLKINASCPLCKN EICESGEDASPPSPTNQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80400			RING/U-box superfamily protein...		Lus10011475 [exp]	0	1
AT5G08139			RING/U-box superfamily protein...		Lus10023235 [exp]	2.4	0.8593
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10003011 [exp]	5.2	0.8426
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	6.5	0.8569
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10005703 [exp]	7.7	0.8388
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	9.5	0.8326
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	9.5	0.8162
AT3G19553			Amino acid permease family pro...		Lus10040966 [exp]	11.3	0.8232
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	11.5	0.8311
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031815 [exp]	12.5	0.7907
AT5G51670			Protein of unknown function (D...		Lus10031110 [exp]	14.0	0.7680

Compare expression of checked genes

Lus10011475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.