Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15550 412 / 8e-144 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT1G80340 365 / 2e-125 ATGA3OX2, GA4H ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, gibberellin 3-oxidase 2 (.1) AT1G80330 337 / 2e-114 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT4G21690 311 / 4e-104 ATGA3OX3 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) AT3G21420 191 / 2e-57 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 189 / 9e-57 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G78550 188 / 2e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 186 / 2e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT2G38240 185 / 2e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G60980 184 / 1e-54 ATGA20OX4 gibberellin 20-oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023113 [exp] 320 / 2e-109 AT1G15550 171 / 1e-51 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10008100 [exp] 288 / 3e-95 AT4G21690 273 / 8e-90 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013135 [exp] 276 / 2e-90 AT1G15550 263 / 4e-86 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10013134 [exp] 265 / 4e-86 AT4G21690 242 / 3e-77 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10030995 [exp] 199 / 1e-60 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10040112 [exp] 195 / 6e-59 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10006518 [exp] 195 / 8e-59 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030934 [exp] 194 / 2e-58 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10011985 [exp] 192 / 2e-57 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176600 [exp] 497 / 3e-177 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.003G057400 [exp] 492 / 4e-175 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.018G033600 [exp] 352 / 3e-120 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.006G247700 [exp] 333 / 6e-113 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.009G022800 [exp] 198 / 4e-60 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 197 / 1e-59 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G381700 [exp] 191 / 1e-57 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G355200 [exp] 186 / 1e-55 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.006G101200 [exp] 186 / 2e-55 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G382400 [exp] 181 / 1e-53 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10011476 pacid=23182597 polypeptide=Lus10011476 locus=Lus10011476.g ID=Lus10011476.BGIv1.0 annot-version=v1.0 ATGCCATCCATCCAACTAGCCGATGCTTTCAGATCCCATCCAGTCAACCTCCACCAAAAACACCAACTAAACGACTTCACCTCCCTCAAAGAACTCCCCG ACTCCTACAAATGGTCCACCCGAATTAACCACGACAATGTTCGAACCAACGAACCGGTCCCTGTCATCGACCTCTCCCGGCCAGAAGCCATGAGGGAGAT CGGACATGCATGCAGGGAGTGGGGGGTGTTCCAAGTTGTCAACCACGGTGTCCCCACCGAGGTTGTCGACCGCATAGAGAAGAATGTCGGGGAGAACTTC TTCGGGTTGCCCATGTACGAAAAACTCAAGGCTGCCCGGTCCCCCAACGGGGTTTCTGGGTTTGGGTTGGCTCGGATTTCAACCTTCTTCCCTAAGCTCA TGTGGTCCGAAGGGTTCACCGTGGTTGGCTCCCCCGCCGAGCATTTCATGAAAGTTTGGCCGGAGGATTACAGACAATTTTGTGACATTGTAGAAGGGTA CGAGAAGGAAATGCAAAAGCTTGCATCAAGGTTGATGGACCTAATCCTTGGCTCCCTTGGGATCACAACCCAAGACTTGAGTTGGGACTATAGTACCCCC AAGTCGGTTTCGTCGGCTGCGATTCAGCTGAACCACTACCCGGCTTGCCCAGACCCGGACCAGGCGATGGGTCTGGGCCCGCACACTGACTCGACCCTGG TCACCATACTCCACCAGAACGCCACCAGCGGGCTGCAGGTGCTGAGGGACGGAGGGGCCCAGTGGGTTACCGTCCCTCCCATCAAGGGCGCGCTGGTGGT GAACGTGGGCGACCTGCTTCACATCTTGTCGAACGGGTTGTACTCCAGCGTGGTCCACCGGGCGGTGGTGAACCGGAAGAAGAACAGGATGGCGATTGCG TACCTATACGGGCCGCCTTCGAATGTTAGGATCTCGCCGGTGGGGAAACTCGTGGGGCCGGGGCAACCTCCATTGTATAGGGCGGTGACTTGGAGTGAGT ACCTTGGGACTAAGGCCAAACACTTCAACAAAGCTTTGTCTTCAGTTAGGTTGTGTGCTGGTGCTACTCCCATGAATGGACTGGTTGATGCAAGAGATGG TAGCAATAATAATAGAGTGAAAGTTGGGTAG
AA sequence Show only first row Show all	>Lus10011476 pacid=23182597 polypeptide=Lus10011476 locus=Lus10011476.g ID=Lus10011476.BGIv1.0 annot-version=v1.0 MPSIQLADAFRSHPVNLHQKHQLNDFTSLKELPDSYKWSTRINHDNVRTNEPVPVIDLSRPEAMREIGHACREWGVFQVVNHGVPTEVVDRIEKNVGENF FGLPMYEKLKAARSPNGVSGFGLARISTFFPKLMWSEGFTVVGSPAEHFMKVWPEDYRQFCDIVEGYEKEMQKLASRLMDLILGSLGITTQDLSWDYSTP KSVSSAAIQLNHYPACPDPDQAMGLGPHTDSTLVTILHQNATSGLQVLRDGGAQWVTVPPIKGALVVNVGDLLHILSNGLYSSVVHRAVVNRKKNRMAIA YLYGPPSNVRISPVGKLVGPGQPPLYRAVTWSEYLGTKAKHFNKALSSVRLCAGATPMNGLVDARDGSNNNRVKVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	0	1
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015477 [exp]	1.0	0.8454
AT5G42660			Protein of unknown function (D...		Lus10032863 [exp]	2.6	0.7993
AT4G36750			Quinone reductase family prote...		Lus10011292 [exp]	3.5	0.7740
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	4.2	0.8285
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10026535 [exp]	5.7	0.8097
					Lus10012740 [exp]	6.0	0.8187
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10028230 [exp]	6.2	0.7695
AT1G05070			Protein of unknown function (D...		Lus10035288 [exp]	8.5	0.7824
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013884 [exp]	9.7	0.8056
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10038022 [exp]	10.2	0.7290

Compare expression of checked genes

Lus10011476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.